Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CPY3401_RS02265 Genome accession   NZ_AP024599
Coordinates   467370..467774 (+) Length   134 a.a.
NCBI ID   WP_000599254.1    Uniprot ID   -
Organism   Helicobacter pylori strain 3401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462370..472774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY3401_RS02230 (CPY3401_04510) - 462543..463481 (-) 939 WP_000833937.1 tetraacyldisaccharide 4'-kinase -
  CPY3401_RS02235 (CPY3401_04520) - 463478..464260 (-) 783 WP_221062716.1 NAD+ synthase -
  CPY3401_RS02245 (CPY3401_04530) ilvC 464508..465500 (+) 993 WP_221062717.1 ketol-acid reductoisomerase -
  CPY3401_RS02250 (CPY3401_04540) minD 465525..466331 (+) 807 WP_221062718.1 septum site-determining protein MinD -
  CPY3401_RS02255 (CPY3401_04550) minE 466328..466561 (+) 234 WP_180512331.1 cell division topological specificity factor MinE -
  CPY3401_RS02260 (CPY3401_04560) dprA 466573..467373 (+) 801 WP_221062719.1 DNA-processing protein DprA Machinery gene
  CPY3401_RS02265 (CPY3401_04570) dprB 467370..467774 (+) 405 WP_000599254.1 Holliday junction resolvase RuvX Machinery gene
  CPY3401_RS02270 (CPY3401_04580) - 467902..468264 (+) 363 WP_221062720.1 tetratricopeptide repeat protein -
  CPY3401_RS02275 (CPY3401_04590) - 468452..468790 (+) 339 WP_000699916.1 hypothetical protein -
  CPY3401_RS02280 (CPY3401_04600) - 468774..469334 (+) 561 WP_221062721.1 hypothetical protein -
  CPY3401_RS02285 (CPY3401_04610) - 469345..469845 (+) 501 WP_002203590.1 glycoside hydrolase family protein -
  CPY3401_RS07795 - 469865..470026 (+) 162 WP_001871784.1 hypothetical protein -
  CPY3401_RS07975 (CPY3401_04620) - 470084..470281 (+) 198 WP_001868304.1 hypothetical protein -
  CPY3401_RS02295 - 470363..470743 (+) 381 Protein_454 DUF1294 domain-containing protein -
  CPY3401_RS02300 - 470743..471528 (+) 786 WP_000119830.1 hypothetical protein -
  CPY3401_RS02305 (CPY3401_04640) - 471518..472609 (+) 1092 WP_221062722.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15371.91 Da        Isoelectric Point: 9.5494

>NTDB_id=86333 CPY3401_RS02265 WP_000599254.1 467370..467774(+) (dprB) [Helicobacter pylori strain 3401]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNKSYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQFLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=86333 CPY3401_RS02265 WP_000599254.1 467370..467774(+) (dprB) [Helicobacter pylori strain 3401]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAACAAAAGCTATACGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGTCAGCAGTTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933

Multiple sequence alignment