Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   WFE12_RS15070 Genome accession   NZ_CP147877
Coordinates   2837576..2838181 (-) Length   201 a.a.
NCBI ID   WP_003229717.1    Uniprot ID   O05392
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2832576..2843181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS15040 - 2833389..2833778 (+) 390 WP_004398667.1 TIGR04086 family membrane protein -
  WFE12_RS15045 yajC 2833835..2834101 (-) 267 WP_004398708.1 preprotein translocase subunit YajC -
  WFE12_RS15050 tgt 2834138..2835283 (-) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  WFE12_RS15055 queA 2835310..2836338 (-) 1029 WP_003229723.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  WFE12_RS15060 yrzS 2836368..2836568 (-) 201 WP_003222669.1 DUF2905 domain-containing protein -
  WFE12_RS15065 ruvB 2836561..2837565 (-) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  WFE12_RS15070 ruvA 2837576..2838181 (-) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  WFE12_RS15075 bofC 2838320..2838832 (-) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  WFE12_RS15080 csbX 2838880..2840187 (-) 1308 WP_003246197.1 MFS transporter -
  WFE12_RS15085 iolG 2840258..2841283 (-) 1026 WP_004398990.1 inositol 2-dehydrogenase -
  WFE12_RS15090 yrzF 2841521..2842168 (+) 648 WP_003246159.1 phosphotransferase -
  WFE12_RS15095 - 2842214..2842336 (-) 123 WP_003229707.1 hypothetical protein -
  WFE12_RS15100 yrzH 2842421..2842711 (+) 291 WP_003246047.1 DUF5412 family protein -
  WFE12_RS15105 - 2842718..2842858 (+) 141 WP_004398683.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22584.08 Da        Isoelectric Point: 5.4072

>NTDB_id=863328 WFE12_RS15070 WP_003229717.1 2837576..2838181(-) (ruvA) [Bacillus subtilis subsp. subtilis str. 168]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=863328 WFE12_RS15070 WP_003229717.1 2837576..2838181(-) (ruvA) [Bacillus subtilis subsp. subtilis str. 168]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvA Streptococcus pneumoniae TIGR4

39.806

100

0.408
  ruvA Streptococcus pneumoniae R6

39.806

100

0.408
  ruvA Streptococcus pneumoniae D39

39.806

100

0.408