Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CPY3401_RS00305 | Genome accession | NZ_AP024599 |
| Coordinates | 67406..67981 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203658.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 3401 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 62406..72981
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPY3401_RS00280 (CPY3401_00560) | uvrD | 63097..65142 (+) | 2046 | WP_221062526.1 | DNA helicase UvrD | - |
| CPY3401_RS00285 (CPY3401_00570) | flgA | 65139..65795 (+) | 657 | WP_221062527.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| CPY3401_RS00290 (CPY3401_00580) | - | 65805..66368 (+) | 564 | WP_000780124.1 | UbiX family flavin prenyltransferase | - |
| CPY3401_RS00295 (CPY3401_00590) | coaD | 66368..66841 (+) | 474 | WP_221062528.1 | pantetheine-phosphate adenylyltransferase | - |
| CPY3401_RS00300 (CPY3401_00600) | tmk | 66843..67418 (+) | 576 | WP_000289736.1 | dTMP kinase | - |
| CPY3401_RS00305 (CPY3401_00610) | comFC | 67406..67981 (+) | 576 | WP_001203658.1 | ComF family protein | Machinery gene |
| CPY3401_RS00310 (CPY3401_00620) | - | 68014..70053 (+) | 2040 | WP_001147697.1 | HsdM family class I SAM-dependent methyltransferase | - |
| CPY3401_RS00315 (CPY3401_00630) | - | 70050..70682 (+) | 633 | WP_221062529.1 | restriction endonuclease subunit S | - |
| CPY3401_RS00320 (CPY3401_00640) | - | 70651..71271 (+) | 621 | WP_259662946.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21274.87 Da Isoelectric Point: 9.4519
>NTDB_id=86324 CPY3401_RS00305 WP_001203658.1 67406..67981(+) (comFC) [Helicobacter pylori strain 3401]
MRCLTCLRLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKPTYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLRLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKPTYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=86324 CPY3401_RS00305 WP_001203658.1 67406..67981(+) (comFC) [Helicobacter pylori strain 3401]
ATGCGCTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAACGCTCCCCTTTATGGCATCGCCATTGATGATAAAGTCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCTACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACTTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGCTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAACGCTCCCCTTTATGGCATCGCCATTGATGATAAAGTCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCTACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACTTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |