Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   Q7644_RS10285 Genome accession   NZ_CP131645
Coordinates   1938592..1938987 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2004S05-027     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1933592..1943987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7644_RS10265 (Q7644_10330) rfbC 1933669..1934226 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  Q7644_RS10270 (Q7644_10335) - 1934270..1936288 (-) 2019 WP_010360937.1 oligopeptide transporter, OPT family -
  Q7644_RS10275 (Q7644_10340) dnaJ 1936483..1937604 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  Q7644_RS10280 (Q7644_10345) - 1937738..1938187 (+) 450 WP_341931106.1 transposase -
  Q7644_RS10285 (Q7644_10350) comE 1938592..1938987 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q7644_RS10290 (Q7644_10355) - 1939088..1939207 (-) 120 Protein_1998 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=863238 Q7644_RS10285 WP_003703428.1 1938592..1938987(-) (comE) [Neisseria gonorrhoeae strain 2004S05-027]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=863238 Q7644_RS10285 WP_003703428.1 1938592..1938987(-) (comE) [Neisseria gonorrhoeae strain 2004S05-027]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1