Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q7646_RS02360 Genome accession   NZ_CP131638
Coordinates   451486..452097 (+) Length   203 a.a.
NCBI ID   WP_123768185.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2014E02-242     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446486..457097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7646_RS02335 (Q7646_02335) - 446967..447548 (-) 582 WP_033910016.1 superoxide dismutase -
  Q7646_RS02340 (Q7646_02340) dnaB 447712..449118 (+) 1407 WP_123771571.1 replicative DNA helicase -
  Q7646_RS02345 (Q7646_02345) pilH 449273..449938 (+) 666 WP_341948219.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7646_RS02350 (Q7646_02350) pilV 449970..450581 (+) 612 WP_250328389.1 type IV pilus modification protein PilV Machinery gene
  Q7646_RS02355 (Q7646_02355) pilJ 450578..451507 (+) 930 WP_250328390.1 PilW family protein Machinery gene
  Q7646_RS02360 (Q7646_02360) pilK 451486..452097 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  Q7646_RS02365 (Q7646_02365) pilL 452099..452572 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7646_RS02370 (Q7646_02370) - 452642..452950 (-) 309 WP_050161303.1 AzlD family protein -
  Q7646_RS02375 (Q7646_02375) - 452947..453658 (-) 712 Protein_463 AzlC family ABC transporter permease -
  Q7646_RS02380 (Q7646_02380) dut 453824..454276 (+) 453 WP_047951389.1 dUTP diphosphatase -
  Q7646_RS02385 (Q7646_02385) dapC 454348..455535 (+) 1188 WP_033910019.1 succinyldiaminopimelate transaminase -
  Q7646_RS02390 (Q7646_02390) yaaA 455691..456470 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22031.95 Da        Isoelectric Point: 8.0862

>NTDB_id=863120 Q7646_RS02360 WP_123768185.1 451486..452097(+) (pilK) [Neisseria gonorrhoeae strain 2014E02-242]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRPCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=863120 Q7646_RS02360 WP_123768185.1 451486..452097(+) (pilK) [Neisseria gonorrhoeae strain 2014E02-242]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTCCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956