Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   Q7646_RS02355 Genome accession   NZ_CP131638
Coordinates   450578..451507 (+) Length   309 a.a.
NCBI ID   WP_250328390.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2014E02-242     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 445578..456507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7646_RS02330 (Q7646_02330) - 446228..446737 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q7646_RS02335 (Q7646_02335) - 446967..447548 (-) 582 WP_033910016.1 superoxide dismutase -
  Q7646_RS02340 (Q7646_02340) dnaB 447712..449118 (+) 1407 WP_123771571.1 replicative DNA helicase -
  Q7646_RS02345 (Q7646_02345) pilH 449273..449938 (+) 666 WP_341948219.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7646_RS02350 (Q7646_02350) pilV 449970..450581 (+) 612 WP_250328389.1 type IV pilus modification protein PilV Machinery gene
  Q7646_RS02355 (Q7646_02355) pilJ 450578..451507 (+) 930 WP_250328390.1 PilW family protein Machinery gene
  Q7646_RS02360 (Q7646_02360) pilK 451486..452097 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  Q7646_RS02365 (Q7646_02365) pilL 452099..452572 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7646_RS02370 (Q7646_02370) - 452642..452950 (-) 309 WP_050161303.1 AzlD family protein -
  Q7646_RS02375 (Q7646_02375) - 452947..453658 (-) 712 Protein_463 AzlC family ABC transporter permease -
  Q7646_RS02380 (Q7646_02380) dut 453824..454276 (+) 453 WP_047951389.1 dUTP diphosphatase -
  Q7646_RS02385 (Q7646_02385) dapC 454348..455535 (+) 1188 WP_033910019.1 succinyldiaminopimelate transaminase -
  Q7646_RS02390 (Q7646_02390) yaaA 455691..456470 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 309 a.a.        Molecular weight: 33921.87 Da        Isoelectric Point: 9.3367

>NTDB_id=863119 Q7646_RS02355 WP_250328390.1 450578..451507(+) (pilJ) [Neisseria gonorrhoeae strain 2014E02-242]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHIKDVVVSDVPQKNYLFSLKKSNANKLIPIAESPNINYQNFFQVSSALIFQYGIDDVNASDATTVVSSCAAISK
PGKQIPTLEDAKKELKIVSQDKEQGNIARQRHVVNAYAVGKIAGEGGLFRFQLDDKGKWGNPQLLVKKVKRMKVRYIYVS
GCPEDEDVGKEEQFKYTDKFDGSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 930 bp        

>NTDB_id=863119 Q7646_RS02355 WP_250328390.1 450578..451507(+) (pilJ) [Neisseria gonorrhoeae strain 2014E02-242]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGCTTCAATATGTCTGAGCATATCAAAGATGTTGTTGTTTCCGATGTGCCGCAAAAAAACTATCTTTTTTCCTTAAAAAA
GAGCAATGCAAATAAACTTATCCCCATAGCGGAATCTCCAAATATCAATTATCAGAATTTTTTCCAGGTTAGTAGCGCAT
TGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGACGCGACTACCGTCGTCAGCAGCTGTGCCGCAATATCGAAA
CCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGATAAGGAGCAAGGCAATAT
AGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGGTGAGGGAGGTTTGTTCCGCTTCCAATTGG
ATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAAACGTATGAAAGTGCGGTATATCTATGTTTCC
GGTTGTCCTGAAGATGAAGATGTCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACGGCTCTGTTACGCCTGC
CGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTTATGCTTACCGTA
TCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

90.735

100

0.919