Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   Q7646_RS01435 Genome accession   NZ_CP131638
Coordinates   282101..282904 (-) Length   267 a.a.
NCBI ID   WP_050169637.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2014E02-242     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 277101..287904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7646_RS01425 (Q7646_01415) - 279505..279780 (-) 276 WP_153707850.1 hypothetical protein -
  Q7646_RS01430 (Q7646_01420) comA 279812..282031 (+) 2220 WP_154017543.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q7646_RS01435 (Q7646_01425) comL 282101..282904 (-) 804 WP_050169637.1 outer membrane protein assembly factor BamD Machinery gene
  Q7646_RS01440 (Q7646_01430) rluD 282903..284027 (+) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Q7646_RS01445 (Q7646_01435) - 284180..285127 (-) 948 Protein_283 bile acid:sodium symporter family protein -
  Q7646_RS01450 (Q7646_01440) - 285204..285428 (-) 225 WP_226876112.1 hypothetical protein -
  Q7646_RS01455 (Q7646_01445) pgeF 285580..286359 (+) 780 WP_341948209.1 peptidoglycan editing factor PgeF -
  Q7646_RS01460 (Q7646_01450) lptE 286411..286890 (+) 480 WP_003687653.1 LPS assembly lipoprotein LptE -
  Q7646_RS01465 (Q7646_01455) holA 286892..287890 (+) 999 WP_003687654.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30837.92 Da        Isoelectric Point: 9.3372

>NTDB_id=863113 Q7646_RS01435 WP_050169637.1 282101..282904(-) (comL) [Neisseria gonorrhoeae strain 2014E02-242]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDQKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=863113 Q7646_RS01435 WP_050169637.1 282101..282904(-) (comL) [Neisseria gonorrhoeae strain 2014E02-242]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATCAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

99.625

100

0.996
  comL Neisseria meningitidis MC58

95.88

100

0.959