Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   KI216_RS09970 Genome accession   NZ_AP024595
Coordinates   2095875..2096315 (-) Length   146 a.a.
NCBI ID   WP_005009019.1    Uniprot ID   N9CCC4
Organism   Acinetobacter bouvetii strain JCM 18991     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2090875..2101315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI216_RS09940 (ACBO_19320) tadA 2091049..2091573 (-) 525 WP_005009031.1 tRNA adenosine(34) deaminase TadA -
  KI216_RS09945 (ACBO_19330) - 2091581..2092705 (-) 1125 WP_005009029.1 enoyl-CoA hydratase/isomerase family protein -
  KI216_RS09950 (ACBO_19340) ung 2092702..2093415 (-) 714 WP_005009026.1 uracil-DNA glycosylase -
  KI216_RS09955 (ACBO_19350) - 2093461..2094057 (-) 597 WP_005009024.1 6-pyruvoyl trahydropterin synthase family protein -
  KI216_RS09960 (ACBO_19360) gspK 2094179..2095156 (-) 978 WP_005009022.1 type II secretion system minor pseudopilin GspK -
  KI216_RS09965 (ACBO_19370) xcpW 2095153..2095875 (-) 723 WP_005009020.1 type II secretion system protein GspJ Machinery gene
  KI216_RS09970 (ACBO_19380) xcpV 2095875..2096315 (-) 441 WP_005009019.1 type II secretion system minor pseudopilin GspI Machinery gene
  KI216_RS09975 (ACBO_19390) - 2096305..2096853 (-) 549 WP_005009018.1 pilus assembly FimT family protein -
  KI216_RS09980 (ACBO_19400) - 2096863..2097477 (-) 615 WP_005009016.1 TetR/AcrR family transcriptional regulator -
  KI216_RS09985 (ACBO_19410) - 2097522..2098295 (-) 774 WP_005009014.1 TatD family hydrolase -
  KI216_RS09990 (ACBO_19420) - 2098327..2098668 (-) 342 WP_005009011.1 PilZ domain-containing protein -
  KI216_RS09995 (ACBO_19430) - 2098686..2099669 (-) 984 WP_005009009.1 DNA polymerase III, delta' subunit -
  KI216_RS10000 (ACBO_19440) kdsB 2099686..2100447 (-) 762 WP_005009008.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15925.31 Da        Isoelectric Point: 8.7551

>NTDB_id=86310 KI216_RS09970 WP_005009019.1 2095875..2096315(-) (xcpV) [Acinetobacter bouvetii strain JCM 18991]
MKAECAKQDSLTCAAVQQRSARSCTGFTLLEVMVALAIFATAAMALTNVAMQYTQATANAVLRTKAQFVVLNEIANMEIN
RDWMTGTSSKQVTQQGEKWQIDKSAQATVSPNVQRIDVQISLMNAETNKVESGITTLVFFNQKAKA

Nucleotide


Download         Length: 441 bp        

>NTDB_id=86310 KI216_RS09970 WP_005009019.1 2095875..2096315(-) (xcpV) [Acinetobacter bouvetii strain JCM 18991]
ATGAAAGCTGAATGTGCAAAGCAAGATTCTTTGACCTGTGCCGCGGTACAGCAGCGCAGTGCGAGAAGCTGTACAGGCTT
TACACTGCTGGAAGTGATGGTCGCGCTGGCAATTTTTGCAACTGCGGCTATGGCTTTAACCAATGTCGCAATGCAATACA
CGCAAGCCACTGCAAATGCTGTTTTAAGAACAAAGGCGCAGTTTGTTGTACTCAATGAAATTGCAAATATGGAAATAAAC
CGCGACTGGATGACTGGAACATCTTCCAAGCAAGTCACACAGCAGGGAGAAAAGTGGCAAATTGATAAATCTGCACAGGC
GACCGTTAGCCCTAATGTGCAGCGCATTGATGTGCAAATCAGTTTAATGAATGCAGAAACGAACAAAGTTGAGTCAGGTA
TTACCACTTTGGTGTTCTTTAATCAGAAGGCCAAAGCTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(63-122)

Prokaryotic N-terminal methylation motif (N_methyl)

(22-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9CCC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

71.074

82.877

0.589

Multiple sequence alignment