Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   Q7653_RS09085 Genome accession   NZ_CP131616
Coordinates   1724911..1725306 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020C08-294     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1719911..1730306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7653_RS09040 (Q7653_09150) - 1720214..1720459 (-) 246 WP_003689849.1 hypothetical protein -
  Q7653_RS09045 (Q7653_09155) - 1720571..1720999 (+) 429 WP_020997399.1 CopD family protein -
  Q7653_RS09050 (Q7653_09160) - 1721011..1721487 (+) 477 WP_003689851.1 CYTH domain-containing protein -
  Q7653_RS09055 (Q7653_09165) - 1721517..1722005 (-) 489 WP_003689852.1 dihydrofolate reductase -
  Q7653_RS09060 (Q7653_09170) aroG 1722073..1723128 (-) 1056 WP_003689853.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  Q7653_RS09065 (Q7653_09175) - 1723290..1723517 (-) 228 WP_153707886.1 hypothetical protein -
  Q7653_RS09070 (Q7653_09180) - 1723745..1724041 (+) 297 WP_003689859.1 hypothetical protein -
  Q7653_RS09075 (Q7653_09185) - 1724038..1724277 (+) 240 WP_118781302.1 hypothetical protein -
  Q7653_RS09080 - 1724830..1724977 (+) 148 Protein_1770 peptidase -
  Q7653_RS09085 (Q7653_09190) comE 1724911..1725306 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q7653_RS09090 (Q7653_09195) - 1725408..1725527 (-) 120 Protein_1772 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=862810 Q7653_RS09085 WP_003703428.1 1724911..1725306(-) (comE) [Neisseria gonorrhoeae strain 2020C08-294]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=862810 Q7653_RS09085 WP_003703428.1 1724911..1725306(-) (comE) [Neisseria gonorrhoeae strain 2020C08-294]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1