Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q6D61_RS27030 Genome accession   NZ_CP131614
Coordinates   5702988..5703860 (+) Length   290 a.a.
NCBI ID   WP_034040535.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 1709-25403     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5697988..5708860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6D61_RS27005 (Q6D61_27015) nadC 5698329..5699177 (+) 849 WP_003116246.1 carboxylating nicotinate-nucleotide diphosphorylase -
  Q6D61_RS27015 (Q6D61_27025) pilA 5699379..5699828 (-) 450 WP_003112842.1 type 4a pilus biogenesis protein PilA Machinery gene
  Q6D61_RS27020 (Q6D61_27030) pilB 5700060..5701760 (+) 1701 WP_003112841.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q6D61_RS27025 (Q6D61_27035) pilC 5701764..5702984 (+) 1221 WP_003112840.1 type 4a pilus biogenesis protein PilC Machinery gene
  Q6D61_RS27030 (Q6D61_27040) pilD 5702988..5703860 (+) 873 WP_034040535.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  Q6D61_RS27035 (Q6D61_27045) coaE 5703857..5704468 (+) 612 WP_034040533.1 dephospho-CoA kinase -
  Q6D61_RS27040 (Q6D61_27050) yacG 5704465..5704665 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  Q6D61_RS27045 (Q6D61_27055) - 5704702..5704911 (-) 210 WP_003094660.1 hypothetical protein -
  Q6D61_RS27050 (Q6D61_27060) - 5705017..5705706 (-) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  Q6D61_RS27055 (Q6D61_27065) - 5705703..5706173 (-) 471 WP_034040530.1 hypothetical protein -
  Q6D61_RS27060 (Q6D61_27070) - 5706170..5706595 (-) 426 WP_009875877.1 GNAT family N-acetyltransferase -
  Q6D61_RS27065 (Q6D61_27075) - 5706728..5707357 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  Q6D61_RS27070 (Q6D61_27080) - 5707354..5707803 (+) 450 WP_003094670.1 MOSC domain-containing protein -
  Q6D61_RS27075 (Q6D61_27085) - 5707829..5707999 (+) 171 WP_003094672.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31756.82 Da        Isoelectric Point: 7.6612

>NTDB_id=862761 Q6D61_RS27030 WP_034040535.1 5702988..5703860(+) (pilD) [Pseudomonas aeruginosa strain 1709-25403]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTCQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=862761 Q6D61_RS27030 WP_034040535.1 5702988..5703860(+) (pilD) [Pseudomonas aeruginosa strain 1709-25403]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGTCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(137-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.714

96.552

0.538
  pilD Vibrio campbellii strain DS40M4

53.004

97.586

0.517
  pilD Acinetobacter nosocomialis M2

50.53

97.586

0.493
  pilD Acinetobacter baumannii D1279779

50.53

97.586

0.493
  pilD Neisseria gonorrhoeae MS11

48.921

95.862

0.469