Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q5709_RS13110 Genome accession   NZ_CP131483
Coordinates   2757414..2758049 (+) Length   211 a.a.
NCBI ID   WP_005018309.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2752414..2763049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS13100 (Q5709_13105) - 2754549..2755358 (-) 810 WP_005018311.1 NAD-dependent epimerase/dehydratase family protein -
  Q5709_RS13105 (Q5709_13110) recG 2755382..2757427 (+) 2046 WP_005018310.1 ATP-dependent DNA helicase RecG -
  Q5709_RS13110 (Q5709_13115) comF 2757414..2758049 (+) 636 WP_005018309.1 ComF family protein Machinery gene
  Q5709_RS13115 (Q5709_13120) - 2758046..2758447 (-) 402 WP_005018308.1 NUDIX hydrolase -
  Q5709_RS13120 (Q5709_13125) - 2758457..2759038 (-) 582 WP_005404596.1 TIGR00730 family Rossman fold protein -
  Q5709_RS13125 (Q5709_13130) - 2759203..2760216 (+) 1014 WP_005018301.1 magnesium and cobalt transport protein CorA -
  Q5709_RS13130 (Q5709_13135) - 2760251..2760541 (-) 291 WP_005018299.1 STAS domain-containing protein -
  Q5709_RS13135 (Q5709_13140) - 2760565..2761203 (-) 639 WP_005018297.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  Q5709_RS13140 (Q5709_13145) - 2761221..2761883 (-) 663 WP_005018295.1 outer membrane lipid asymmetry maintenance protein MlaD -
  Q5709_RS13145 (Q5709_13150) mlaE 2761883..2762659 (-) 777 WP_005018292.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24264.38 Da        Isoelectric Point: 8.8071

>NTDB_id=862649 Q5709_RS13110 WP_005018309.1 2757414..2758049(+) (comF) [Acinetobacter radioresistens strain MC-14]
MPMFNPSSLLRPISRLLPCPLCSSSLQMQHGVCHDCWEQLPWYRQTVERQELNIHVACGYQYPIDRIIQQFKYEQQLNYQ
QLLTASILTLRLPKVQAIVPMPISTERLIERGYNQSLVIAKILARELNVPVWQPVIRLAQHSQKGLSRLERLNQIEMQFQ
PILTERRRYRRVLMLDDVVTTGSSLSALAQALTQLGCQHIFAACIAAAETA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=862649 Q5709_RS13110 WP_005018309.1 2757414..2758049(+) (comF) [Acinetobacter radioresistens strain MC-14]
ATGCCTATGTTTAACCCATCCTCTTTACTCAGACCTATCTCACGGCTGCTACCCTGCCCGCTTTGTAGCAGCAGTTTACA
AATGCAGCATGGAGTTTGTCATGATTGCTGGGAACAGCTGCCTTGGTATCGGCAGACTGTAGAACGACAAGAATTAAACA
TTCATGTTGCCTGTGGCTATCAGTATCCAATAGATCGCATCATCCAGCAGTTTAAATATGAGCAGCAGTTAAACTATCAG
CAGCTACTGACTGCATCGATACTAACCCTCAGGTTACCTAAAGTTCAGGCCATTGTGCCTATGCCCATATCAACCGAACG
TTTAATTGAACGCGGCTATAATCAGTCACTGGTCATTGCAAAAATTCTAGCCCGTGAGCTGAATGTTCCGGTCTGGCAAC
CTGTAATTCGGCTGGCTCAGCATTCGCAAAAAGGCTTATCGCGACTCGAACGTCTGAACCAGATTGAAATGCAATTTCAG
CCGATCCTCACCGAACGCCGGCGTTACCGCCGGGTATTAATGCTAGACGATGTAGTGACTACAGGCAGCTCACTTTCGGC
CTTGGCTCAAGCCCTGACCCAGCTGGGCTGCCAGCATATTTTTGCTGCGTGTATTGCAGCCGCAGAAACAGCCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.872

100

0.569
  comF Acinetobacter baumannii D1279779

56.872

100

0.569