Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   Q5709_RS06140 Genome accession   NZ_CP131483
Coordinates   1307626..1308012 (+) Length   128 a.a.
NCBI ID   WP_005014697.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1302626..1313012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS06110 (Q5709_06115) kdsB 1303471..1304232 (+) 762 WP_005014710.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q5709_RS06115 (Q5709_06120) - 1304250..1305233 (+) 984 WP_005014708.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  Q5709_RS06120 (Q5709_06125) - 1305252..1305593 (+) 342 WP_005014707.1 PilZ domain-containing protein -
  Q5709_RS06125 (Q5709_06130) - 1305637..1306410 (+) 774 WP_248134270.1 TatD family hydrolase -
  Q5709_RS06130 (Q5709_06135) - 1306450..1307058 (+) 609 WP_101162145.1 TetR/AcrR family transcriptional regulator -
  Q5709_RS06135 (Q5709_06140) - 1307073..1307636 (+) 564 WP_416394324.1 type II secretion system protein -
  Q5709_RS06140 (Q5709_06145) xcpV 1307626..1308012 (+) 387 WP_005014697.1 type II secretion system minor pseudopilin GspI Machinery gene
  Q5709_RS06145 (Q5709_06150) xcpW 1308009..1308644 (+) 636 WP_005014695.1 type II secretion system minor pseudopilin GspJ Machinery gene
  Q5709_RS06150 (Q5709_06155) gspK 1308667..1309611 (+) 945 WP_005014694.1 type II secretion system minor pseudopilin GspK -
  Q5709_RS06155 (Q5709_06160) - 1309708..1310304 (+) 597 WP_005014693.1 6-pyruvoyl trahydropterin synthase family protein -
  Q5709_RS06160 (Q5709_06165) ung 1310349..1311062 (+) 714 WP_005014692.1 uracil-DNA glycosylase -
  Q5709_RS06165 (Q5709_06170) - 1311059..1312183 (+) 1125 WP_005014691.1 enoyl-CoA hydratase/isomerase family protein -
  Q5709_RS06170 (Q5709_06175) tadA 1312187..1312678 (+) 492 WP_005014690.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14090.28 Da        Isoelectric Point: 7.0119

>NTDB_id=862637 Q5709_RS06140 WP_005014697.1 1307626..1308012(+) (xcpV) [Acinetobacter radioresistens strain MC-14]
MKPKGFTLLEVMVALAIFAIAAVALTKVAMQYTQATSNAILRTKAQFVGMNEIALMEMNQAWLQGTESKQVTSQGETWQI
DKQAASTISPNVQRIEVQISLFNTEQGKVENGIATLVFFNHPLKENTS

Nucleotide


Download         Length: 387 bp        

>NTDB_id=862637 Q5709_RS06140 WP_005014697.1 1307626..1308012(+) (xcpV) [Acinetobacter radioresistens strain MC-14]
GTGAAACCTAAAGGCTTTACATTACTTGAAGTTATGGTTGCGCTAGCAATTTTTGCGATAGCAGCAGTTGCTCTGACAAA
AGTAGCCATGCAATATACACAAGCCACCTCAAATGCAATTTTAAGGACAAAAGCGCAATTTGTGGGTATGAATGAAATTG
CTCTCATGGAAATGAATCAGGCGTGGCTACAGGGAACAGAGTCTAAACAGGTAACATCTCAAGGTGAAACCTGGCAAATT
GACAAACAGGCAGCTTCCACCATCAGTCCAAATGTACAGCGTATTGAAGTACAAATTAGTCTGTTTAATACAGAGCAGGG
TAAGGTTGAAAATGGAATTGCGACCTTGGTGTTTTTTAATCATCCACTCAAAGAAAATACTTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.032

96.875

0.766