Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Q4617_RS14520 Genome accession   NZ_CP131470
Coordinates   2960588..2962018 (+) Length   476 a.a.
NCBI ID   WP_004917021.1    Uniprot ID   -
Organism   Acinetobacter junii strain SC22     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2955588..2967018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS14500 (Q4617_14500) - 2955883..2956911 (-) 1029 WP_305156047.1 transposase -
  Q4617_RS14505 (Q4617_14505) pbpG 2957076..2958137 (-) 1062 WP_146751475.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Q4617_RS14510 (Q4617_14510) - 2958349..2958984 (+) 636 WP_004957336.1 response regulator -
  Q4617_RS14515 (Q4617_14515) pilS 2959000..2960565 (+) 1566 WP_112987268.1 PAS domain-containing sensor histidine kinase Regulator
  Q4617_RS14520 (Q4617_14520) pilR 2960588..2962018 (+) 1431 WP_004917021.1 sigma-54 dependent transcriptional regulator Regulator
  Q4617_RS14525 (Q4617_14525) - 2962058..2963233 (-) 1176 WP_005403527.1 S41 family peptidase -
  Q4617_RS14530 (Q4617_14530) gpmI 2963243..2964787 (-) 1545 WP_005403526.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  Q4617_RS14535 (Q4617_14535) lptG 2964907..2965977 (-) 1071 WP_005403525.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53458.42 Da        Isoelectric Point: 6.1504

>NTDB_id=862569 Q4617_RS14520 WP_004917021.1 2960588..2962018(+) (pilR) [Acinetobacter junii strain SC22]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAVETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILI
LANHFIQKISQEWELPVKSLTTRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSISIPSNAYVQS
DESEITLQSASPNPSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=862569 Q4617_RS14520 WP_004917021.1 2960588..2962018(+) (pilR) [Acinetobacter junii strain SC22]
ATGGCAACTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTGTGTCTTCTTATGCAAATGACGCTCGCACG
TATGGGAATCAAAACTCATCTTGCATATCGTGTGGAGCAAGCCAAAAAATTCTTTACCGAGTTTCAGTACGATGCATGTC
TAACCGATCTTAACCTTCCAGATGGAAATGGTCTTGATCTTGTCAAACATGTGACTCAAAACTATCCAAACACACCAATC
GCTGTTCTTACTGCTTACGGAAATATGGACATTGCAATTGCAGCACTAAAAGCTGGAGCGTTTGACTTTGTTAGCAAACC
AGTGAATCAGACACATCTCGATCAACTGATTCAAAAAGCATTAAACCGCCCTCAACCAGAACAAGAGGCGGTAGAAACAG
CCTTAGAAAACAAATTGCTGATTGGTCGTTCAGCTCCTATTCAGCAATTACGCATCGCTTTAAAAAAGATTGCTCGTTCT
CAAGCGCCTGTTTTTATCACAGGTGAATCAGGAACAGGAAAAGAAGTTGTTGCGAACTTAGTTCATCGTTTAAGTAATCG
CAGCGAAGGACCTTTCATTGCCATCAACTGTGGTGCTATTCCAACAGAATTAATGGAAAGCGAATTATTCGGTCATAAGA
AAGGCAGCTTTACAGGTGCAACACAAGATAAACAAGGTCTTATCTTATCGGCACACGGCGGCAGCCTTTTTTTAGATGAA
ATCGCAGAACTTCCCTTAAATATGCAAGTAAAACTTTTACGTGCAGTACAAGAGAAAAAAATTCGTCCAGTTGGCTCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGCCACCAAGATTTAGAACTCTTGGTTCAGCAAGGTCGCTTTA
GACAAGATTTATTCTTCCGCATTCATGTGATGGATATCGTATTGCCCCCACTTCGTGAACGTGGTCAAGATATCTTAATT
CTGGCAAATCATTTTATTCAAAAGATTAGCCAAGAATGGGAGTTACCTGTTAAATCCCTCACCACACGTGCAGAGCAATT
CCTCTTGCAGCAATATTTTCCAGGTAACGTTCGCGAACTTCGAAACATTATTGAACGTGCAATCACTCTCAGTGATGATG
AAACCATTGATTTGGCTCATTTGCAAACTGCACCTCTGCGTAGCTCAATCAGTATTCCTTCAAATGCTTATGTTCAGTCA
GATGAAAGTGAAATAACGCTGCAAAGTGCGAGTCCAAACCCAAGCTCTAAAAAATTACCGCCAGAAGGTTTGGAGCGCTA
TTTAGAAAATATTGAAAAAGAAGTGTTATTGAATGCTTTAAATCTGACCCACTGGAATCGAACGCTAGCAGCAAAAAAAC
TTGGAATGACCTTCCGATCTTTACGCTATCGTTTGAAAAAGTTTGGTTTAGATACTGAGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.034

100

0.84
  pilR Pseudomonas aeruginosa PAK

50.216

97.479

0.49