Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   Q4617_RS14515 Genome accession   NZ_CP131470
Coordinates   2959000..2960565 (+) Length   521 a.a.
NCBI ID   WP_112987268.1    Uniprot ID   -
Organism   Acinetobacter junii strain SC22     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2954000..2965565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS14490 (Q4617_14490) - 2954404..2955168 (-) 765 WP_112986667.1 hypothetical protein -
  Q4617_RS14495 (Q4617_14495) - 2955192..2955806 (-) 615 WP_004957343.1 hypothetical protein -
  Q4617_RS14500 (Q4617_14500) - 2955883..2956911 (-) 1029 WP_305156047.1 transposase -
  Q4617_RS14505 (Q4617_14505) pbpG 2957076..2958137 (-) 1062 WP_146751475.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Q4617_RS14510 (Q4617_14510) - 2958349..2958984 (+) 636 WP_004957336.1 response regulator -
  Q4617_RS14515 (Q4617_14515) pilS 2959000..2960565 (+) 1566 WP_112987268.1 PAS domain-containing sensor histidine kinase Regulator
  Q4617_RS14520 (Q4617_14520) pilR 2960588..2962018 (+) 1431 WP_004917021.1 sigma-54 dependent transcriptional regulator Regulator
  Q4617_RS14525 (Q4617_14525) - 2962058..2963233 (-) 1176 WP_005403527.1 S41 family peptidase -
  Q4617_RS14530 (Q4617_14530) gpmI 2963243..2964787 (-) 1545 WP_005403526.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59326.35 Da        Isoelectric Point: 6.6882

>NTDB_id=862568 Q4617_RS14515 WP_112987268.1 2959000..2960565(+) (pilS) [Acinetobacter junii strain SC22]
MLGKIASSVSQTVYKLGIWYSGYRLIISISLLLIYLLTAEQLASDYDYPFLYFYTLICFIAFSIFQLFLLKILPVQVTKQ
LILIFLIDVICLALITFSAGGPNLQLSLLYVIVIFSSAILLNSQLSLIVTLFAVIMVVYQRFIGDFFNYNNLNHLSNSIF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLSNPAANTLLGINVPVSTE
KTPLIKWQPDLFELIKFSELKDGEEFSFESQLSPYTVNVRVKHLIVPEQPLFLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKGSDIHQQDMLSRMISKQAKRIDSIIQDTLGMARNKPTEPQIIQLTEFFETLLNEDLADVK
SKIRISLPENLTIMFDEKQLRQVLINLIRNAIRHNAPEAEYIEVNIHLNDGRTRIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLNYIEQQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=862568 Q4617_RS14515 WP_112987268.1 2959000..2960565(+) (pilS) [Acinetobacter junii strain SC22]
ATGCTGGGCAAAATAGCCTCTTCCGTCTCCCAAACTGTCTATAAGCTCGGTATTTGGTATAGTGGATATCGGCTGATTAT
CTCTATCAGCCTTTTGCTCATTTATTTATTAACGGCTGAGCAATTAGCCTCAGATTATGATTATCCTTTTTTATATTTCT
ATACACTGATTTGCTTTATTGCATTTAGTATTTTCCAGCTTTTTTTACTCAAAATACTTCCAGTACAAGTCACTAAACAG
CTCATTTTAATTTTTCTTATTGATGTGATTTGTTTAGCGTTGATTACTTTCTCTGCGGGGGGGCCAAACTTACAATTAAG
TTTGCTGTACGTAATCGTAATCTTTTCTTCTGCAATTCTACTAAACTCTCAGCTCTCGCTGATCGTGACACTTTTTGCTG
TCATTATGGTGGTTTATCAACGTTTTATTGGCGATTTCTTTAACTACAACAACTTAAATCATTTAAGTAATAGTATCTTT
CTCGCTTTTTTATTCTTTGTTGTGCATGCGATTGGACGTATTGCAGTACAACGTTTTAAAATTTTAGAGACGTTGACATT
CCATCAATCCATAGAGATTCATCAACTTCAAAATATCAACCGCTACATCCTTGAACAGATTGAAGATGGTTATCTCGTTC
TAGATGAAAGTAACCATATTGTTTTAAGTAATCCTGCTGCCAATACTTTACTTGGAATTAATGTCCCTGTTTCTACTGAG
AAAACACCTTTAATAAAATGGCAACCTGATCTTTTTGAGCTGATCAAATTTAGTGAGCTAAAAGATGGTGAGGAATTTAG
TTTTGAATCACAACTTAGCCCATACACGGTCAATGTTCGAGTCAAACATTTAATTGTTCCTGAACAGCCCCTATTCTTAT
TGATCCTGAAAGATGCCCAAAAACTTACTCAACAGGTTCAACAATTAAAATTGGCAGCTTTAGGACAACTTTCTGCAAGT
ATTGCACACGAAATCAGAAATCCACTTGCAGCTATTGTACAAGCCAATGAATTACTTAAGGGTAGCGATATCCATCAGCA
AGACATGCTATCTCGAATGATTAGCAAACAGGCAAAAAGGATCGATAGCATCATTCAAGATACTCTGGGAATGGCACGTA
ATAAACCCACTGAACCACAAATTATTCAATTAACAGAATTTTTTGAAACATTATTAAATGAAGATTTAGCAGATGTTAAA
TCTAAGATCCGAATCAGTTTGCCTGAAAATTTAACGATCATGTTTGATGAAAAACAATTAAGACAAGTATTAATCAATCT
TATTCGTAATGCTATAAGACACAATGCACCTGAAGCAGAATATATTGAAGTGAATATTCATCTAAATGATGGTCGCACCC
GAATAGATGTGATTGATTTTGGTACAGGCGTTGCAAAAAGAGATATTTCTCAGTTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACTTGTCTCATAGTTTTTGTGAGGCAAATCATGCAAAGCTCAATTATATAGAGCA
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.116

99.04

0.645