Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   Q4617_RS07820 Genome accession   NZ_CP131470
Coordinates   1560471..1560944 (+) Length   157 a.a.
NCBI ID   WP_227540305.1    Uniprot ID   -
Organism   Acinetobacter junii strain SC22     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555471..1565944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS07790 (Q4617_07790) kdsB 1556132..1556893 (+) 762 WP_004911526.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q4617_RS07795 (Q4617_07795) - 1556895..1557884 (+) 990 WP_112986427.1 DNA polymerase III subunit delta' -
  Q4617_RS07800 (Q4617_07800) - 1558109..1558453 (+) 345 WP_004911520.1 PilZ domain-containing protein -
  Q4617_RS07805 (Q4617_07805) - 1558476..1559249 (+) 774 WP_112986426.1 TatD family hydrolase -
  Q4617_RS07810 (Q4617_07810) - 1559288..1559896 (+) 609 WP_168153910.1 TetR/AcrR family transcriptional regulator -
  Q4617_RS07815 (Q4617_07815) - 1559909..1560457 (+) 549 WP_112986424.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q4617_RS07820 (Q4617_07820) xcpV 1560471..1560944 (+) 474 WP_227540305.1 type II secretion system minor pseudopilin GspI Machinery gene
  Q4617_RS07825 (Q4617_07825) xcpW 1560941..1561669 (+) 729 WP_227540303.1 type II secretion system minor pseudopilin GspJ Machinery gene
  Q4617_RS07830 (Q4617_07830) gspK 1561666..1562625 (+) 960 WP_112986422.1 type II secretion system minor pseudopilin GspK -
  Q4617_RS07835 (Q4617_07835) - 1562732..1563328 (+) 597 WP_004954093.1 6-carboxytetrahydropterin synthase -
  Q4617_RS07840 (Q4617_07840) ung 1563367..1564080 (+) 714 WP_004911491.1 uracil-DNA glycosylase -
  Q4617_RS07845 (Q4617_07845) - 1564077..1565201 (+) 1125 WP_171293853.1 enoyl-CoA hydratase/isomerase family protein -
  Q4617_RS07850 (Q4617_07850) tadA 1565208..1565711 (+) 504 WP_087539688.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17567.32 Da        Isoelectric Point: 9.7314

>NTDB_id=862555 Q4617_RS07820 WP_227540305.1 1560471..1560944(+) (xcpV) [Acinetobacter junii strain SC22]
MTNRQFSLLDKKSDSLNFQTIAEVKLDSLKIQKAFTLLEVMVALAIFAVAAIALTKIAMQYTQSTSNAILRTKAQFVAMN
EIATMEINQEWLEGTQSKQVTAQGETWQIDKKAQSTLSPKIQRIELQVSLYNTEQGKVEAGITNLVFFNYPAKVKTS

Nucleotide


Download         Length: 474 bp        

>NTDB_id=862555 Q4617_RS07820 WP_227540305.1 1560471..1560944(+) (xcpV) [Acinetobacter junii strain SC22]
ATGACTAATCGACAATTCAGTTTGCTTGATAAAAAATCAGATAGTCTTAATTTTCAAACAATTGCTGAGGTTAAACTAGA
TTCTCTCAAAATACAGAAAGCTTTTACGCTGTTAGAGGTGATGGTTGCTTTAGCTATTTTCGCGGTCGCTGCAATCGCAT
TAACTAAAATAGCTATGCAGTATACCCAATCAACTTCAAATGCAATTTTACGTACTAAAGCCCAATTTGTGGCAATGAAT
GAAATTGCAACCATGGAAATAAATCAAGAGTGGCTTGAGGGCACACAATCTAAACAAGTGACTGCGCAGGGAGAAACTTG
GCAAATCGATAAAAAAGCACAATCAACATTAAGTCCAAAAATCCAACGTATCGAGTTACAAGTAAGTTTATATAACACTG
AACAAGGCAAAGTTGAGGCAGGAATTACCAATCTTGTATTCTTTAATTATCCTGCTAAAGTCAAAACATCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(30-54)

Type II secretion system (T2SS), protein I (T2SSI)

(71-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

81.301

78.344

0.637