Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q4617_RS02255 Genome accession   NZ_CP131470
Coordinates   463414..464073 (-) Length   219 a.a.
NCBI ID   WP_112987457.1    Uniprot ID   -
Organism   Acinetobacter junii strain SC22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458414..469073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS02220 (Q4617_02220) - 459071..459745 (+) 675 WP_004909422.1 outer membrane lipid asymmetry maintenance protein MlaD -
  Q4617_RS02225 (Q4617_02225) - 459765..460397 (+) 633 WP_004909421.1 phospholipid-binding protein MlaC -
  Q4617_RS02230 (Q4617_02230) - 460409..460696 (+) 288 WP_004964385.1 lipid asymmetry maintenance protein MlaB -
  Q4617_RS02235 (Q4617_02235) - 460751..461278 (-) 528 WP_112987459.1 hypothetical protein -
  Q4617_RS02240 (Q4617_02240) - 461280..462293 (-) 1014 WP_112987458.1 magnesium and cobalt transport protein CorA -
  Q4617_RS02245 (Q4617_02245) - 462444..463028 (+) 585 WP_004964372.1 TIGR00730 family Rossman fold protein -
  Q4617_RS02250 (Q4617_02250) - 463038..463424 (+) 387 WP_005403262.1 NUDIX domain-containing protein -
  Q4617_RS02255 (Q4617_02255) comF 463414..464073 (-) 660 WP_112987457.1 ComF family protein Machinery gene
  Q4617_RS02260 (Q4617_02260) recG 464066..466111 (-) 2046 WP_112987456.1 ATP-dependent DNA helicase RecG -
  Q4617_RS02265 (Q4617_02265) - 466131..466949 (+) 819 WP_112987455.1 NAD-dependent epimerase/dehydratase family protein -
  Q4617_RS02270 (Q4617_02270) - 467074..468054 (+) 981 WP_112987454.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24988.25 Da        Isoelectric Point: 8.8068

>NTDB_id=862545 Q4617_RS02255 WP_112987457.1 463414..464073(-) (comF) [Acinetobacter junii strain SC22]
MFKLLSRGAQQVADYFTACHLCDIGVRAHHGVCQSCWQQLPWLKHKIERHQQDILVACHYEYPISQLIQQFKYEQQLHHL
RLLSGLLLELKLPKVHAIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSLVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=862545 Q4617_RS02255 WP_112987457.1 463414..464073(-) (comF) [Acinetobacter junii strain SC22]
ATGTTTAAATTATTGAGCCGAGGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACACCATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTGTTGCCTGTCATTATGAATATCCGATCAGCCAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAGCTGCCAAAAGTACATGCCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGAGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCCCAACATTCTCAAAAAGGTTTAAGCCGCTTAGAGCGACTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCTAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

63.636

95.434

0.607
  comF Acinetobacter baumannii D1279779

63.158

95.434

0.603