Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   Q7258_RS07200 Genome accession   NZ_CP131444
Coordinates   1430341..1430652 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S27     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1425341..1435652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7258_RS07180 (Q7258_07180) ctsE 1426210..1427769 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  Q7258_RS07185 (Q7258_07185) ctsX 1427759..1428346 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  Q7258_RS07190 (Q7258_07190) ctsP 1428350..1428958 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  Q7258_RS07195 (Q7258_07195) ctsD 1428951..1430363 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  Q7258_RS07200 (Q7258_07200) ctsR 1430341..1430652 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  Q7258_RS07205 (Q7258_07205) nifJ 1430676..1434236 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  Q7258_RS07210 (Q7258_07210) - 1434329..1434970 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=862467 Q7258_RS07200 WP_002862131.1 1430341..1430652(-) (ctsR) [Campylobacter jejuni strain S27]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=862467 Q7258_RS07200 WP_002862131.1 1430341..1430652(-) (ctsR) [Campylobacter jejuni strain S27]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99