Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q6388_RS11095 Genome accession   NZ_CP130895
Coordinates   2104776..2105093 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1913940     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099776..2110093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6388_RS11065 (Q6388_11065) - 2101161..2101543 (-) 383 Protein_2130 pilin -
  Q6388_RS11070 (Q6388_11070) - 2101678..2102163 (-) 486 WP_125121586.1 pilin -
  Q6388_RS11075 (Q6388_11075) - 2102220..2102567 (-) 348 Protein_2132 pilin -
  Q6388_RS11080 (Q6388_11080) - 2102620..2103024 (-) 405 Protein_2133 pilin -
  Q6388_RS11085 (Q6388_11085) - 2103159..2103598 (-) 440 Protein_2134 pilin -
  Q6388_RS11090 (Q6388_11090) - 2104124..2104852 (-) 729 WP_353114220.1 pilin -
  Q6388_RS11095 (Q6388_11095) pilE 2104776..2105093 (-) 318 WP_003697861.1 pilin Machinery gene
  Q6388_RS11100 (Q6388_11100) - 2105423..2105614 (+) 192 WP_014580443.1 hypothetical protein -
  Q6388_RS11105 (Q6388_11105) - 2105678..2106367 (-) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  Q6388_RS11110 (Q6388_11110) - 2106364..2107107 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  Q6388_RS11115 (Q6388_11115) gmhB 2107137..2107700 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  Q6388_RS11120 (Q6388_11120) - 2107843..2109495 (+) 1653 WP_103195361.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=861904 Q6388_RS11095 WP_003697861.1 2104776..2105093(-) (pilE) [Neisseria gonorrhoeae strain NJ1913940]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=861904 Q6388_RS11095 WP_003697861.1 2104776..2105093(-) (pilE) [Neisseria gonorrhoeae strain NJ1913940]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41