Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   Q6379_RS10475 Genome accession   NZ_CP130892
Coordinates   1973933..1974328 (+) Length   131 a.a.
NCBI ID   WP_304672973.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ204705     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1968933..1979328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6379_RS10470 (Q6379_10470) - 1973712..1973831 (+) 120 Protein_2016 competence protein ComE -
  Q6379_RS10475 (Q6379_10475) comE 1973933..1974328 (+) 396 WP_304672973.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q6379_RS10480 (Q6379_10480) - 1974733..1975182 (-) 450 WP_012504143.1 transposase -
  Q6379_RS10485 (Q6379_10485) dnaJ 1975316..1976437 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  Q6379_RS10490 (Q6379_10490) - 1976632..1978650 (+) 2019 WP_003690255.1 OPT family oligopeptide transporter -
  Q6379_RS10495 (Q6379_10495) rfbC 1978694..1979251 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13824.66 Da        Isoelectric Point: 10.8790

>NTDB_id=861762 Q6379_RS10475 WP_304672973.1 1973933..1974328(+) (comE) [Neisseria gonorrhoeae strain NJ204705]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLVAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=861762 Q6379_RS10475 WP_304672973.1 1973933..1974328(+) (comE) [Neisseria gonorrhoeae strain NJ204705]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGTGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(51-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992