Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   Q6386_RS08875 Genome accession   NZ_CP130891
Coordinates   1683985..1685025 (+) Length   346 a.a.
NCBI ID   WP_003687618.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208430     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 1678985..1690025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6386_RS08840 (Q6386_08840) rsmA 1679089..1679868 (+) 780 WP_010359834.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  Q6386_RS08845 (Q6386_08845) - 1679883..1680452 (+) 570 WP_003687630.1 GTP pyrophosphokinase -
  Q6386_RS08850 (Q6386_08850) - 1680564..1681019 (+) 456 WP_003690747.1 hypothetical protein -
  Q6386_RS08855 (Q6386_08855) - 1681061..1681789 (+) 729 WP_010357138.1 amino acid ABC transporter ATP-binding protein -
  Q6386_RS08860 (Q6386_08860) - 1681862..1682221 (+) 360 WP_003687624.1 hypothetical protein -
  Q6386_RS08865 (Q6386_08865) - 1682226..1682666 (+) 441 WP_003687622.1 protein YgfX -
  Q6386_RS08870 (Q6386_08870) folC 1682697..1683971 (+) 1275 WP_003687619.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  Q6386_RS08875 (Q6386_08875) tpc 1683985..1685025 (+) 1041 WP_003687618.1 cell division protein FtsN Machinery gene
  Q6386_RS08880 (Q6386_08880) - 1685018..1685515 (+) 498 WP_003687616.1 CvpA family protein -
  Q6386_RS08885 (Q6386_08885) purF 1685709..1687253 (+) 1545 WP_003694871.1 amidophosphoribosyltransferase -
  Q6386_RS08890 (Q6386_08890) greB 1687353..1687844 (+) 492 WP_003687613.1 transcription elongation factor GreB -
  Q6386_RS08895 (Q6386_08895) - 1687903..1688529 (+) 627 WP_003687611.1 phosphoribosylanthranilate isomerase -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 36992.15 Da        Isoelectric Point: 9.8118

>NTDB_id=861706 Q6386_RS08875 WP_003687618.1 1683985..1685025(+) (tpc) [Neisseria gonorrhoeae strain NJ208430]
MSENKQNEVLTGYEQLKRRNRRRLVTASSLVAASCILLAAALSSDPADSNPAPQAGETGATESQTANTAQTPALKSAAEN
GETAADKPQDLAGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEESEKLQQAETAKTEPKQAKQRAAEKVSATA
DSTDTVAVEKPKRSAEPKPQKAERTAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAEGKKTAEK
DRSDGKKHETAQKTDKADKTKTAEKEKSGKAGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSN
YKNARDAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=861706 Q6386_RS08875 WP_003687618.1 1683985..1685025(+) (tpc) [Neisseria gonorrhoeae strain NJ208430]
ATGTCCGAAAACAAACAAAACGAAGTCCTGACCGGTTACGAACAGCTGAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGCTCCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCACTCAGTTCCGATCCTGCCGACAGCAATCCCGCACCGC
AGGCCGGCGAAACCGGCGCAACGGAAAGCCAAACGGCAAACACGGCACAAACCCCTGCCTTGAAATCCGCCGCCGAAAAC
GGGGAAACCGCCGCCGACAAACCGCAGGACTTGGCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCC
TGAAAACGTAGGCGCGCCGCTGGTGCTGATTAACGACCGGCTCGAAGACAGCAACATCAAAGGTTTGGAAGAATCCGAGA
AACTGCAACAGGCAGAAACCGCCAAAACCGAACCGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGTCGGCAACTGCC
GACAGTACGGATACGGTAGCGGTTGAAAAACCGAAACGCTCTGCCGAACCCAAACCGCAAAAAGCGGAACGCACTGCCGA
AGCCAAGCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAACCGAAAACTGCTGCCGAAAAAACCAAAC
CGGATACGGCAAAATCCGACAGCGCGGTAAAAGAAGCGAAAAAAGCCGACAAGGCTGAAGGCAAAAAGACAGCCGAAAAA
GACCGTTCGGACGGCAAAAAACACGAAACGGCGCAAAAAACCGACAAAGCGGACAAAACCAAAACCGCCGAGAAGGAAAA
ATCCGGCAAGGCGGGCAAAAAAGCCGCCATTCAGGCAGGTTATGCCGAAAAAGAACGCGCCTTGAGCCTCCAGCGCAAAA
TGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATCATGACCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAAC
TATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAACTGCGCGTGCACGGCATCGCCGGCCAGGTAACGAATGAATA
G

Domains


Predicted by InterproScan.

(272-344)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

100

100

1