Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   Q6386_RS00075 Genome accession   NZ_CP130891
Coordinates   17050..17445 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208430     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 12050..22445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6386_RS00070 (Q6386_00070) - 16829..16948 (+) 120 Protein_8 competence protein ComE -
  Q6386_RS00075 (Q6386_00075) comE 17050..17445 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q6386_RS00080 (Q6386_00080) - 17852..18301 (-) 450 WP_017147004.1 transposase -
  Q6386_RS00085 (Q6386_00085) dnaJ 18435..19556 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  Q6386_RS00090 (Q6386_00090) - 19751..21769 (+) 2019 WP_003690255.1 OPT family oligopeptide transporter -
  Q6386_RS00095 (Q6386_00095) rfbC 21813..22370 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=861673 Q6386_RS00075 WP_003703428.1 17050..17445(+) (comE) [Neisseria gonorrhoeae strain NJ208430]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=861673 Q6386_RS00075 WP_003703428.1 17050..17445(+) (comE) [Neisseria gonorrhoeae strain NJ208430]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1