Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q6384_RS03855 Genome accession   NZ_CP130890
Coordinates   723544..723900 (+) Length   118 a.a.
NCBI ID   WP_277494056.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208756     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 718544..728900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6384_RS03820 (Q6384_03820) - 719137..719576 (+) 440 Protein_746 pilin -
  Q6384_RS03825 (Q6384_03825) - 719711..720115 (+) 405 Protein_747 pilin -
  Q6384_RS03830 (Q6384_03830) - 720168..720515 (+) 348 Protein_748 pilin -
  Q6384_RS03835 (Q6384_03835) - 720572..721057 (+) 486 WP_125121586.1 pilin -
  Q6384_RS03840 (Q6384_03840) - 721192..721574 (+) 383 Protein_750 pilin -
  Q6384_RS03845 (Q6384_03845) lpxC 722068..722991 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q6384_RS03850 (Q6384_03850) - 723136..723519 (+) 384 Protein_752 pilin -
  Q6384_RS03855 (Q6384_03855) pilE 723544..723900 (+) 357 WP_277494056.1 pilin Machinery gene
  Q6384_RS03860 (Q6384_03860) - 724023..724141 (+) 119 Protein_754 pilin -
  Q6384_RS03865 (Q6384_03865) - 724957..725459 (+) 503 Protein_755 pilin -
  Q6384_RS03870 (Q6384_03870) - 725971..726646 (+) 676 Protein_756 opacity family porin -
  Q6384_RS03875 (Q6384_03875) pilA 726915..728168 (-) 1254 WP_047920694.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12533.10 Da        Isoelectric Point: 8.7280

>NTDB_id=861645 Q6384_RS03855 WP_277494056.1 723544..723900(+) (pilE) [Neisseria gonorrhoeae strain NJ208756]
MSNTFAVAGYCPNHGIWPENNTSAGVASASDIKGKYVESVTVTNGVVTAKMLSSGVNKEIKNKKLSLWAKREAGSVKWFC
GQPVTRDAGAVTDVADTNEKIDTKHLPSTCRDKASDAT

Nucleotide


Download         Length: 357 bp        

>NTDB_id=861645 Q6384_RS03855 WP_277494056.1 723544..723900(+) (pilE) [Neisseria gonorrhoeae strain NJ208756]
ATTTCAAATACTTTCGCCGTTGCCGGGTATTGCCCGAATCACGGCATATGGCCGGAAAACAACACTTCTGCCGGCGTGGC
ATCCGCCTCCGACATCAAAGGCAAATATGTTGAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCAAAATGCTTTCAA
GCGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGCCGGTTCGGTAAAATGGTTCTGC
GGACAGCCGGTTACGCGCGACGCCGGCGCCGTTACCGACGTTGCCGACACCAACGAAAAAATCGACACCAAGCACCTGCC
GTCAACCTGCCGCGATAAGGCATCTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

75.439

96.61

0.729
  pilE Neisseria gonorrhoeae strain FA1090

71.818

93.22

0.669