Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   Q6378_RS06555 Genome accession   NZ_CP130889
Coordinates   1251971..1252366 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ209649     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1246971..1257366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6378_RS06550 (Q6378_06550) - 1251750..1251869 (+) 120 Protein_1272 competence protein ComE -
  Q6378_RS06555 (Q6378_06555) comE 1251971..1252366 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q6378_RS06560 (Q6378_06560) - 1252773..1253222 (-) 450 WP_017147004.1 transposase -
  Q6378_RS06565 (Q6378_06565) dnaJ 1253356..1254477 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  Q6378_RS06570 (Q6378_06570) - 1254672..1256690 (+) 2019 WP_003690255.1 OPT family oligopeptide transporter -
  Q6378_RS06575 (Q6378_06575) rfbC 1256734..1257291 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=861607 Q6378_RS06555 WP_003703428.1 1251971..1252366(+) (comE) [Neisseria gonorrhoeae strain NJ209649]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=861607 Q6378_RS06555 WP_003703428.1 1251971..1252366(+) (comE) [Neisseria gonorrhoeae strain NJ209649]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1