Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q6378_RS05605 Genome accession   NZ_CP130889
Coordinates   1077801..1078118 (+) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ209649     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1072801..1083118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6378_RS05580 (Q6378_05580) - 1073400..1075051 (-) 1652 Protein_1090 LTA synthase family protein -
  Q6378_RS05585 (Q6378_05585) gmhB 1075194..1075757 (+) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  Q6378_RS05590 (Q6378_05590) - 1075787..1076530 (+) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  Q6378_RS05595 (Q6378_05595) - 1076527..1077216 (+) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  Q6378_RS05600 (Q6378_05600) - 1077280..1077471 (-) 192 WP_014580443.1 hypothetical protein -
  Q6378_RS05605 (Q6378_05605) pilE 1077801..1078118 (+) 318 WP_003697861.1 pilin Machinery gene
  Q6378_RS05610 (Q6378_05610) - 1078084..1078770 (+) 687 WP_143824052.1 pilin -
  Q6378_RS05615 (Q6378_05615) - 1079296..1079735 (+) 440 Protein_1097 pilin -
  Q6378_RS05620 (Q6378_05620) - 1079870..1080263 (+) 394 Protein_1098 pilin -
  Q6378_RS05625 (Q6378_05625) - 1080316..1080663 (+) 348 Protein_1099 pilin -
  Q6378_RS05630 (Q6378_05630) - 1080720..1081205 (+) 486 WP_125121586.1 pilin -
  Q6378_RS05635 (Q6378_05635) - 1081340..1081722 (+) 383 Protein_1101 pilin -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=861601 Q6378_RS05605 WP_003697861.1 1077801..1078118(+) (pilE) [Neisseria gonorrhoeae strain NJ209649]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=861601 Q6378_RS05605 WP_003697861.1 1077801..1078118(+) (pilE) [Neisseria gonorrhoeae strain NJ209649]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41