Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   Q6378_RS04520 Genome accession   NZ_CP130889
Coordinates   862618..863163 (+) Length   181 a.a.
NCBI ID   WP_003692554.1    Uniprot ID   Q5FAD1
Organism   Neisseria gonorrhoeae strain NJ209649     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 857618..868163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6378_RS04500 (Q6378_04500) - 857687..860083 (-) 2397 WP_003690571.1 penicillin-binding protein 1A -
  Q6378_RS04505 (Q6378_04505) pilM 860235..861350 (+) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  Q6378_RS04510 (Q6378_04510) pilN 861353..861952 (+) 600 WP_047926976.1 PilN domain-containing protein Machinery gene
  Q6378_RS04515 (Q6378_04515) - 861953..862600 (+) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  Q6378_RS04520 (Q6378_04520) pilP 862618..863163 (+) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  Q6378_RS04525 (Q6378_04525) pilQ 863182..865377 (+) 2196 WP_047918359.1 type IV pilus secretin PilQ Machinery gene
  Q6378_RS04530 (Q6378_04530) - 866645..867157 (+) 513 WP_003687349.1 shikimate kinase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20094.62 Da        Isoelectric Point: 4.7529

>NTDB_id=861596 Q6378_RS04520 WP_003692554.1 862618..863163(+) (pilP) [Neisseria gonorrhoeae strain NJ209649]
MKHYALLISFLALSACSQNSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=861596 Q6378_RS04520 WP_003692554.1 862618..863163(+) (pilP) [Neisseria gonorrhoeae strain NJ209649]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAATTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5FAD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983