Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q6378_RS04510 Genome accession   NZ_CP130889
Coordinates   861353..861952 (+) Length   199 a.a.
NCBI ID   WP_047926976.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ209649     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 856353..866952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6378_RS04495 (Q6378_04495) yihA 856937..857566 (+) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  Q6378_RS04500 (Q6378_04500) - 857687..860083 (-) 2397 WP_003690571.1 penicillin-binding protein 1A -
  Q6378_RS04505 (Q6378_04505) pilM 860235..861350 (+) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  Q6378_RS04510 (Q6378_04510) pilN 861353..861952 (+) 600 WP_047926976.1 PilN domain-containing protein Machinery gene
  Q6378_RS04515 (Q6378_04515) - 861953..862600 (+) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  Q6378_RS04520 (Q6378_04520) pilP 862618..863163 (+) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  Q6378_RS04525 (Q6378_04525) pilQ 863182..865377 (+) 2196 WP_047918359.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22283.64 Da        Isoelectric Point: 9.7317

>NTDB_id=861595 Q6378_RS04510 WP_047926976.1 861353..861952(+) (pilN) [Neisseria gonorrhoeae strain NJ209649]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGVVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=861595 Q6378_RS04510 WP_047926976.1 861353..861952(+) (pilN) [Neisseria gonorrhoeae strain NJ209649]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGTCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975