Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q6357_RS17265 Genome accession   NZ_CP130888
Coordinates   3368153..3369055 (-) Length   300 a.a.
NCBI ID   WP_035700738.1    Uniprot ID   A0A1K1TX41
Organism   Bacillus altitudinis strain 28M1-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3363153..3374055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS17250 (Q6357_17250) xerC 3363528..3364445 (-) 918 WP_039166693.1 tyrosine recombinase XerC -
  Q6357_RS17255 (Q6357_17255) trmFO 3364508..3365812 (-) 1305 WP_159159620.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q6357_RS17260 (Q6357_17260) topA 3365883..3367958 (-) 2076 WP_304717202.1 type I DNA topoisomerase -
  Q6357_RS17265 (Q6357_17265) dprA 3368153..3369055 (-) 903 WP_035700738.1 DNA-processing protein DprA Machinery gene
  Q6357_RS17270 (Q6357_17270) sucD 3369119..3370021 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  Q6357_RS17275 (Q6357_17275) sucC 3370044..3371204 (-) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  Q6357_RS17280 (Q6357_17280) - 3371381..3371656 (-) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  Q6357_RS17285 (Q6357_17285) - 3371653..3373386 (-) 1734 WP_159159619.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34045.38 Da        Isoelectric Point: 8.2776

>NTDB_id=861557 Q6357_RS17265 WP_035700738.1 3368153..3369055(-) (dprA) [Bacillus altitudinis strain 28M1-1]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
VPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=861557 Q6357_RS17265 WP_035700738.1 3368153..3369055(-) (dprA) [Bacillus altitudinis strain 28M1-1]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
GTTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1K1TX41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38