Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Q6357_RS13880 Genome accession   NZ_CP130888
Coordinates   2714193..2714528 (-) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 28M1-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2709193..2719528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS13830 (Q6357_13830) comGC 2709399..2709692 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  Q6357_RS13835 (Q6357_13835) comGD 2709685..2710131 (+) 447 WP_041506955.1 competence type IV pilus minor pilin ComGD -
  Q6357_RS13840 (Q6357_13840) - 2710151..2710429 (+) 279 WP_258165328.1 type II secretion system protein -
  Q6357_RS13845 (Q6357_13845) comGF 2710371..2710868 (+) 498 WP_041506957.1 competence type IV pilus minor pilin ComGF -
  Q6357_RS13850 (Q6357_13850) comGG 2710865..2711248 (+) 384 WP_178896851.1 competence type IV pilus minor pilin ComGG -
  Q6357_RS13855 (Q6357_13855) - 2711309..2711503 (+) 195 WP_008342191.1 YqzE family protein -
  Q6357_RS13860 (Q6357_13860) - 2711538..2711864 (-) 327 WP_041506959.1 DUF3889 domain-containing protein -
  Q6357_RS13865 (Q6357_13865) tapA 2712117..2712644 (+) 528 WP_304717077.1 amyloid fiber anchoring/assembly protein TapA -
  Q6357_RS13870 (Q6357_13870) sipW 2712694..2713266 (+) 573 WP_017357979.1 signal peptidase I SipW -
  Q6357_RS13875 (Q6357_13875) tasA 2713325..2714125 (+) 801 WP_008342195.1 biofilm matrix protein TasA -
  Q6357_RS13880 (Q6357_13880) sinR 2714193..2714528 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  Q6357_RS13885 (Q6357_13885) - 2714562..2714726 (-) 165 WP_008342197.1 anti-repressor SinI family protein -
  Q6357_RS13890 (Q6357_13890) - 2714911..2715708 (-) 798 WP_216894671.1 YqhG family protein -
  Q6357_RS13895 (Q6357_13895) - 2715723..2717393 (-) 1671 WP_017367587.1 DEAD/DEAH box helicase -
  Q6357_RS13900 (Q6357_13900) gcvT 2717955..2719052 (+) 1098 WP_041506961.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=861549 Q6357_RS13880 WP_017357978.1 2714193..2714528(-) (sinR) [Bacillus altitudinis strain 28M1-1]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=861549 Q6357_RS13880 WP_017357978.1 2714193..2714528(-) (sinR) [Bacillus altitudinis strain 28M1-1]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928