Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   Q6357_RS13830 Genome accession   NZ_CP130888
Coordinates   2709399..2709692 (+) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain 28M1-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2704399..2714692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS13800 (Q6357_13800) - 2704902..2705144 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  Q6357_RS13805 (Q6357_13805) - 2705357..2705737 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  Q6357_RS13815 (Q6357_13815) - 2705962..2706834 (+) 873 WP_041506953.1 STAS domain-containing protein -
  Q6357_RS13820 (Q6357_13820) comGA 2707291..2708361 (+) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  Q6357_RS13825 (Q6357_13825) comGB 2708342..2709382 (+) 1041 WP_041506954.1 competence type IV pilus assembly protein ComGB -
  Q6357_RS13830 (Q6357_13830) comGC 2709399..2709692 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  Q6357_RS13835 (Q6357_13835) comGD 2709685..2710131 (+) 447 WP_041506955.1 competence type IV pilus minor pilin ComGD -
  Q6357_RS13840 (Q6357_13840) - 2710151..2710429 (+) 279 WP_258165328.1 type II secretion system protein -
  Q6357_RS13845 (Q6357_13845) comGF 2710371..2710868 (+) 498 WP_041506957.1 competence type IV pilus minor pilin ComGF -
  Q6357_RS13850 (Q6357_13850) comGG 2710865..2711248 (+) 384 WP_178896851.1 competence type IV pilus minor pilin ComGG -
  Q6357_RS13855 (Q6357_13855) - 2711309..2711503 (+) 195 WP_008342191.1 YqzE family protein -
  Q6357_RS13860 (Q6357_13860) - 2711538..2711864 (-) 327 WP_041506959.1 DUF3889 domain-containing protein -
  Q6357_RS13865 (Q6357_13865) tapA 2712117..2712644 (+) 528 WP_304717077.1 amyloid fiber anchoring/assembly protein TapA -
  Q6357_RS13870 (Q6357_13870) sipW 2712694..2713266 (+) 573 WP_017357979.1 signal peptidase I SipW -
  Q6357_RS13875 (Q6357_13875) tasA 2713325..2714125 (+) 801 WP_008342195.1 biofilm matrix protein TasA -
  Q6357_RS13880 (Q6357_13880) sinR 2714193..2714528 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=861548 Q6357_RS13830 WP_008342186.1 2709399..2709692(+) (comGC) [Bacillus altitudinis strain 28M1-1]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=861548 Q6357_RS13830 WP_008342186.1 2709399..2709692(+) (comGC) [Bacillus altitudinis strain 28M1-1]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCGAATGGAAAAGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392