Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   Q6357_RS13820 Genome accession   NZ_CP130888
Coordinates   2707291..2708361 (+) Length   356 a.a.
NCBI ID   WP_024718839.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 28M1-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2702291..2713361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS13785 (Q6357_13785) - 2703542..2703856 (+) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -
  Q6357_RS13790 (Q6357_13790) - 2703881..2704054 (-) 174 WP_003217333.1 DUF2759 domain-containing protein -
  Q6357_RS13795 (Q6357_13795) - 2704215..2704853 (+) 639 WP_304717076.1 MBL fold metallo-hydrolase -
  Q6357_RS13800 (Q6357_13800) - 2704902..2705144 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  Q6357_RS13805 (Q6357_13805) - 2705357..2705737 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  Q6357_RS13815 (Q6357_13815) - 2705962..2706834 (+) 873 WP_041506953.1 STAS domain-containing protein -
  Q6357_RS13820 (Q6357_13820) comGA 2707291..2708361 (+) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  Q6357_RS13825 (Q6357_13825) comGB 2708342..2709382 (+) 1041 WP_041506954.1 competence type IV pilus assembly protein ComGB -
  Q6357_RS13830 (Q6357_13830) comGC 2709399..2709692 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  Q6357_RS13835 (Q6357_13835) comGD 2709685..2710131 (+) 447 WP_041506955.1 competence type IV pilus minor pilin ComGD -
  Q6357_RS13840 (Q6357_13840) - 2710151..2710429 (+) 279 WP_258165328.1 type II secretion system protein -
  Q6357_RS13845 (Q6357_13845) comGF 2710371..2710868 (+) 498 WP_041506957.1 competence type IV pilus minor pilin ComGF -
  Q6357_RS13850 (Q6357_13850) comGG 2710865..2711248 (+) 384 WP_178896851.1 competence type IV pilus minor pilin ComGG -
  Q6357_RS13855 (Q6357_13855) - 2711309..2711503 (+) 195 WP_008342191.1 YqzE family protein -
  Q6357_RS13860 (Q6357_13860) - 2711538..2711864 (-) 327 WP_041506959.1 DUF3889 domain-containing protein -
  Q6357_RS13865 (Q6357_13865) tapA 2712117..2712644 (+) 528 WP_304717077.1 amyloid fiber anchoring/assembly protein TapA -
  Q6357_RS13870 (Q6357_13870) sipW 2712694..2713266 (+) 573 WP_017357979.1 signal peptidase I SipW -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40366.72 Da        Isoelectric Point: 9.0449

>NTDB_id=861547 Q6357_RS13820 WP_024718839.1 2707291..2708361(+) (comGA) [Bacillus altitudinis strain 28M1-1]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=861547 Q6357_RS13820 WP_024718839.1 2707291..2708361(+) (comGA) [Bacillus altitudinis strain 28M1-1]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTAGGCTCTCTACACTACCAACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCAGAAACAGCGAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACATTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGGTTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.888

100

0.649