Detailed information NTG0861478

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: Q5Z10_RS17020
• Genome accession: NZ_CP130831
• Coordinates: 3708385..3709758 (+)
• Length: 457 a.a.
• NCBI ID: WP_303636555.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. 704A1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3703385..3714758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q5Z10_RS17005	sucD	3704255..3705130 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
Q5Z10_RS17010	sucC	3705151..3706320 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
Q5Z10_RS17015	-	3706717..3708330 (+)	1614	WP_303636554.1	HAMP domain-containing sensor histidine kinase	-
Q5Z10_RS17020	pilR	3708385..3709758 (+)	1374	WP_303636555.1	sigma-54 dependent transcriptional regulator	Regulator
Q5Z10_RS17025	pilB	3709828..3711555 (-)	1728	WP_303636556.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q5Z10_RS17030	-	3711620..3713734 (-)	2115	WP_303636557.1	sulfatase-like hydrolase/transferase	-
Q5Z10_RS17035	pilA	3713834..3714250 (-)	417	WP_303636558.1	pilin	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49473.75 Da
• Isoelectric Point: 6.5136

>NTDB_id=861478 Q5Z10_RS17020 WP_303636555.1 3708385..3709758(+) (pilR) [Stenotrophomonas sp. 704A1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNSERPAPGPAAEQAARLLGDSPAMDVLRATIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPSELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPAEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPA
LAASILARLARSHGRTTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRAPGSGAAAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=861478 Q5Z10_RS17020 WP_303636555.1 3708385..3709758(+) (pilR) [Stenotrophomonas sp. 704A1]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGATATCCGCGAACTGCTGGTGCTGACCCTTGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAATCTGGCCGAAGCGCGCGAGCTGTTGGCCAGCAACCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGTGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGTGCCTTCGATTTCGTCAGCAAGCCGGT
GGATATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACAGCGAGCGCCCGGCCCCCGGTCCCGCCG
CCGAACAGGCCGCGCGCCTGCTCGGCGACTCGCCGGCGATGGATGTGCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGC
CAGGCACCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAACTGGTGGCACGCACCATCCACGCGCAGGGCGCGCG
CGCAGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCAGCGAGCTGATGGAGAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTCCTGGATGAA
GTGGCCGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCGCGGTCGGCGCGCC
GGCCGAGGAACCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGATCTCGCCGAGCTGGTCGAAGACGGACGCTTCC
GCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGTTGCGCGAGCGCCGCCAGGACCTGCCGGCG
CTGGCCGCCTCGATCCTGGCACGGCTGGCGCGCAGCCATGGCCGCACCACCCCGCTGCTGGCGCCGTCGGCACTGGATGC
GCTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAGCGTGCACTGGCACTGGCCGAGGAAG
ACCGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGTGCGCCCGGCAGCGGCGCCGCCGCCGAAGCCGTG
GTCGACCTGCAGCCCGGCAGCGCCGCACTGCCCTCGTACATCGAGCAGCTCGAGCGCAGTGCGATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACGCGCACCGCCGCGCAGCTGGGAATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.254	99.781	0.641
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49