Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   Q5H80_RS11495 Genome accession   NZ_CP130748
Coordinates   2640134..2640739 (+) Length   201 a.a.
NCBI ID   WP_017103846.1    Uniprot ID   A0AA34XMH3
Organism   Vibrio sp. SNU_ST1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2635134..2645739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS11475 (Q5H80_11475) - 2635356..2636273 (-) 918 WP_304564827.1 ABC transporter ATP-binding protein -
  Q5H80_RS11480 (Q5H80_11480) - 2636595..2638226 (-) 1632 WP_304569410.1 SulP family inorganic anion transporter -
  Q5H80_RS11485 (Q5H80_11485) can 2638513..2639172 (+) 660 WP_304564828.1 carbonate dehydratase -
  Q5H80_RS11490 (Q5H80_11490) hpt 2639266..2639796 (-) 531 WP_009847591.1 hypoxanthine phosphoribosyltransferase -
  Q5H80_RS11495 (Q5H80_11495) opaR 2640134..2640739 (+) 606 WP_017103846.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  Q5H80_RS11500 (Q5H80_11500) lpdA 2641081..2642511 (-) 1431 WP_304564829.1 dihydrolipoyl dehydrogenase -
  Q5H80_RS11505 (Q5H80_11505) aceF 2642754..2644649 (-) 1896 WP_304564830.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23250.49 Da        Isoelectric Point: 5.9335

>NTDB_id=861299 Q5H80_RS11495 WP_017103846.1 2640134..2640739(+) (opaR) [Vibrio sp. SNU_ST1]
MDSITKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLRNIATEMVTLVAQDSNWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=861299 Q5H80_RS11495 WP_017103846.1 2640134..2640739(+) (opaR) [Vibrio sp. SNU_ST1]
ATGGACTCAATAACGAAGAGACCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
AGTATTCTCTCGCCGTGGCATTGGCCGCGGTGGACACGCTGATATCGCAGACATCGCTCAGGTGTCAGTAGCAACAGTAT
TTAACTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTACTTAACCACGTTGTTCGTCAATTCTCGAACTTCCTTTCA
GACAACATTGACCTAGATATTCACGCAAAAGAAAATCTACGTAATATTGCGACTGAAATGGTGACTTTAGTGGCTCAAGA
TAGCAATTGGTTAAATGTATGGTTCGAATGGAGTGCATCAACTCGCGATGAAGTATGGCCACTATTCGTAACCACTAACC
GCACCAACCAAATGTTAGTGCAAAACATGTTTAGCAAGGCGATTGAACGCGGCGAAGTCTGTGACGATCACGACCCTAAA
CATCTAGCAAATCTATTCCACGGCATTTGCTACTCGCTATTCATCCAAGCGAAACGTGTAGATACGCAAGAAGAACTTTC
GACCTTGACGGATAGCTACCTAAATATGCTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726