Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Q5H80_RS04610 Genome accession   NZ_CP130748
Coordinates   1021589..1022977 (+) Length   462 a.a.
NCBI ID   WP_009848645.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016589..1027977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS04590 (Q5H80_04590) rsxB 1016958..1017551 (-) 594 WP_009848647.1 electron transport complex subunit RsxB -
  Q5H80_RS04595 (Q5H80_04595) rsxA 1017554..1018132 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  Q5H80_RS04605 (Q5H80_04605) uvrB 1019244..1021274 (+) 2031 WP_304568984.1 excinuclease ABC subunit UvrB -
  Q5H80_RS04610 (Q5H80_04610) luxO 1021589..1022977 (+) 1389 WP_009848645.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  Q5H80_RS04615 (Q5H80_04615) luxU 1023002..1023346 (+) 345 WP_009848644.1 quorum-sensing phosphorelay protein LuxU -
  Q5H80_RS04620 (Q5H80_04620) - 1023431..1024318 (-) 888 WP_304568985.1 YvcK family protein -
  Q5H80_RS04625 (Q5H80_04625) moaA 1024654..1025643 (+) 990 WP_304568986.1 GTP 3',8-cyclase MoaA -
  Q5H80_RS04630 (Q5H80_04630) moaB 1025733..1026245 (+) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  Q5H80_RS04635 (Q5H80_04635) moaC 1026258..1026737 (+) 480 WP_304568987.1 cyclic pyranopterin monophosphate synthase MoaC -
  Q5H80_RS04640 (Q5H80_04640) moaD 1026734..1026979 (+) 246 WP_009848640.1 molybdopterin synthase sulfur carrier subunit -
  Q5H80_RS04645 (Q5H80_04645) moaE 1026982..1027455 (+) 474 WP_304568988.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51749.27 Da        Isoelectric Point: 6.1957

>NTDB_id=861287 Q5H80_RS04610 WP_009848645.1 1021589..1022977(+) (luxO) [Vibrio sp. SNU_ST1]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAEEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNVPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=861287 Q5H80_RS04610 WP_009848645.1 1021589..1022977(+) (luxO) [Vibrio sp. SNU_ST1]
ATGCAATCAAAAACGTTAGATAACAAATCGAAGTATTTGTTAATGGTAGAAGATACCGCGTCGGTAGCAGCGTTATATCG
ATCGTATCTTACACCGCTCGAAATTGATATTAACATTGTCGGCACAGGCCGCGATGCAATCGAGAGTTTGAACCATCGAA
TCCCAGACCTCATTTTATTAGATCTACGCCTGCCCGACATGACGGGGATGGATGTACTGTTTGCTGTAAAACAAAAATAT
CCGGAAGTTCCCGTTATCTTCATGACCGCTCACGGCTCGATTGATACCGCAGTAGAAGCCATGCGACATGGTTCCCAAGA
TTTCCTTATCAAGCCGTGTGAAGCCGACCGACTCCGCATTACGGTGAACAACGCGATCCGCAAAGCCACTAAACTTAAAA
ATAGCTCGGAACATCCAGGAAATCAGAACTATCAAGGCTTTATTGGTAGTAGTCAAACCATGCAGCAGGTTTACCGAACG
ATCGATTCTGCCGCATCCAGTAAGGCCAGTATTTTCATCACTGGTGAAAGTGGTACCGGTAAAGAGGTATGTGCTGAAGC
CATTCACGCTGCGAGTAAGCGTGGTGATAAGCCATTTATCGCGATCAACTGTGCAGCGATTCCTAAAGACTTGATTGAGA
GTGAACTGTTTGGTCATGTTAAAGGGGCCTTTACGGGTGCTGCAACCGACCGTCAAGGCGCTGCTGAGCTTGCAGATGGT
GGAACCCTGTTCCTCGATGAACTGTGCGAAATGGACTTAGAGCTACAGACTAAGCTGCTGCGCTTTATCCAAACTGGTAC
TTTCCAAAAAGTGGGCTCTTCGAAGATGAAGAGTGTGGATGTTCGTTTCGTATGTGCAACCAACCGCGACCCTTGGAAAG
AAGTTCAAGAAGGTCGCTTTAGAGAAGATTTATACTACCGTTTATATGTGATTCCACTGCACTTACCGCCATTGCGTGAG
CGTGGTGAAGATGTCATCGAAATTGCGTATTCTCTACTCGGCTATATGTCGGTCGAGGAGGGCAAGGCGTTCGTACGTTT
TGCTGAAGAAGTACTCGATCGCTTTAATCAATATGAGTGGCCGGGGAACGTTCGTCAGTTACAAAATGTGTTGCGAAATG
TAGTGGTACTGAATAATGGTAAAGAGATTACTCTCAATATGCTTCCACCGCCATTGAACCAACCAATTGAAAACAGTCTC
CGTTTAAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAGGCCATCAAAGCGTGTGACGGTAACGTTCCTCGTGCGGCAGGTTTCTTGGATGTCAGCCCATCGACGATATACCGTA
AATTGCAAACATGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.161

96.97

0.836
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37