Detailed information NTG0861003

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q4E97_RS21135
• Genome accession: NZ_CP130674
• Coordinates: 4301646..4302446 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain KP9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4296646..4307446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q4E97_RS21100 (Q4E97_21100)	gspH	4296802..4297317 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
Q4E97_RS21105 (Q4E97_21105)	gspI	4297314..4297679 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
Q4E97_RS21110 (Q4E97_21110)	gspJ	4297676..4298272 (+)	597	WP_004191953.1	type II secretion system minor pseudopilin GspJ	-
Q4E97_RS21115 (Q4E97_21115)	gspK	4298269..4299255 (+)	987	WP_023307453.1	type II secretion system minor pseudopilin GspK	-
Q4E97_RS21120 (Q4E97_21120)	gspL	4299242..4300435 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
Q4E97_RS21125 (Q4E97_21125)	-	4300428..4300913 (+)	486	WP_023307455.1	type II secretion system protein M	-
Q4E97_RS21130 (Q4E97_21130)	-	4300903..4301649 (+)	747	WP_004145897.1	type II secretion system protein N	-
Q4E97_RS21135 (Q4E97_21135)	pilD	4301646..4302446 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
Q4E97_RS21140 (Q4E97_21140)	hrpB	4302494..4304923 (-)	2430	WP_004191962.1	ATP-dependent helicase HrpB	-
Q4E97_RS21145 (Q4E97_21145)	thpR	4304996..4305532 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
Q4E97_RS21150 (Q4E97_21150)	sfsA	4305532..4306233 (+)	702	WP_304390740.1	DNA/RNA nuclease SfsA	-
Q4E97_RS21155 (Q4E97_21155)	dksA	4306411..4306866 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=861003 Q4E97_RS21135 WP_004191960.1 4301646..4302446(+) (pilD) [Klebsiella pneumoniae strain KP9]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=861003 Q4E97_RS21135 WP_004191960.1 4301646..4302446(+) (pilD) [Klebsiella pneumoniae strain KP9]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421