Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   Q4437_RS13610 Genome accession   NZ_CP130651
Coordinates   2921156..2921749 (-) Length   197 a.a.
NCBI ID   WP_005480482.1    Uniprot ID   Q87L64
Organism   Vibrio parahaemolyticus strain HZ     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2916156..2926749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4437_RS13590 (Q4437_13590) aroB 2917038..2918138 (-) 1101 WP_005480443.1 3-dehydroquinate synthase -
  Q4437_RS13595 (Q4437_13595) aroK 2918170..2918688 (-) 519 WP_005381319.1 shikimate kinase AroK -
  Q4437_RS13600 (Q4437_13600) pilQ 2918877..2920619 (-) 1743 WP_024699327.1 type IV pilus secretin PilQ Machinery gene
  Q4437_RS13605 (Q4437_13605) pilP 2920651..2921166 (-) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  Q4437_RS13610 (Q4437_13610) pilO 2921156..2921749 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q4437_RS13615 (Q4437_13615) pilN 2921742..2922320 (-) 579 WP_005480484.1 PilN domain-containing protein Machinery gene
  Q4437_RS13620 (Q4437_13620) pilM 2922304..2923320 (-) 1017 WP_005480475.1 type IV pilus biogenesis protein PilM Machinery gene
  Q4437_RS13625 (Q4437_13625) - 2923463..2926033 (+) 2571 WP_005480476.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23091.63 Da        Isoelectric Point: 4.8225

>NTDB_id=860927 Q4437_RS13610 WP_005480482.1 2921156..2921749(-) (pilO) [Vibrio parahaemolyticus strain HZ]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=860927 Q4437_RS13610 WP_005480482.1 2921156..2921749(-) (pilO) [Vibrio parahaemolyticus strain HZ]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACATTGCCACGCATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCAGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87L64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

94.211

96.447

0.909
  pilO Vibrio cholerae strain A1552

72.589

100

0.726