Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   Q4437_RS12290 Genome accession   NZ_CP130651
Coordinates   2656713..2657327 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain HZ     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2651713..2662327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4437_RS12270 (Q4437_12270) - 2651997..2652914 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  Q4437_RS12275 (Q4437_12275) - 2653167..2654837 (-) 1671 WP_005479694.1 SulP family inorganic anion transporter -
  Q4437_RS12280 (Q4437_12280) can 2655121..2655789 (+) 669 WP_005462578.1 carbonate dehydratase -
  Q4437_RS12285 (Q4437_12285) hpt 2655864..2656394 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  Q4437_RS12290 (Q4437_12290) opaR 2656713..2657327 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  Q4437_RS12295 (Q4437_12295) lpdA 2657455..2658882 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  Q4437_RS12300 (Q4437_12300) aceF 2659151..2661034 (-) 1884 WP_005462571.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=860911 Q4437_RS12290 WP_005479697.1 2656713..2657327(+) (opaR) [Vibrio parahaemolyticus strain HZ]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=860911 Q4437_RS12290 WP_005479697.1 2656713..2657327(+) (opaR) [Vibrio parahaemolyticus strain HZ]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAACCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701