Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   K9C73_RS01655 Genome accession   NZ_CP130628
Coordinates   349580..350320 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain MRSN576822     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344580..355320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9C73_RS01640 (K9C73_05050) ponA 345167..347722 (-) 2556 WP_000736662.1 penicillin-binding protein PBP1a -
  K9C73_RS01645 (K9C73_05045) pilM 347884..348942 (+) 1059 WP_005115308.1 pilus assembly protein PilM Machinery gene
  K9C73_RS01650 (K9C73_05040) pilN 348942..349583 (+) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  K9C73_RS01655 (K9C73_05035) pilO 349580..350320 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  K9C73_RS01660 (K9C73_05030) pilP 350331..350858 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  K9C73_RS01665 (K9C73_05025) pilQ 350921..353086 (+) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  K9C73_RS01670 (K9C73_05020) aroK 353098..353667 (+) 570 WP_000643712.1 shikimate kinase AroK -
  K9C73_RS01675 (K9C73_05015) aroB 353696..354778 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=860820 K9C73_RS01655 WP_000076101.1 349580..350320(+) (pilO) [Acinetobacter baumannii strain MRSN576822]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=860820 K9C73_RS01655 WP_000076101.1 349580..350320(+) (pilO) [Acinetobacter baumannii strain MRSN576822]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCAAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGAGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAGGATAACAAGTCTGATATTCCTGTACTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683