Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAD56_RS05640 Genome accession   NZ_CP130625
Coordinates   1177618..1178022 (-) Length   134 a.a.
NCBI ID   WP_373930284.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1172618..1183022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD56_RS05605 (QAD56_05595) - 1172703..1173860 (-) 1158 WP_373930276.1 hypothetical protein -
  QAD56_RS05610 (QAD56_05600) - 1173850..1174635 (-) 786 Protein_1087 hypothetical protein -
  QAD56_RS05615 (QAD56_05605) - 1174635..1175021 (-) 387 WP_373930278.1 DUF1294 domain-containing protein -
  QAD56_RS05620 (QAD56_05610) - 1175362..1176018 (-) 657 WP_373931624.1 glycoside hydrolase family protein -
  QAD56_RS05625 (QAD56_05615) - 1176047..1176607 (-) 561 WP_373930280.1 hypothetical protein -
  QAD56_RS05630 (QAD56_05620) - 1176591..1176929 (-) 339 WP_373930282.1 hypothetical protein -
  QAD56_RS05635 - 1177119..1177424 (-) 306 WP_373931625.1 tetratricopeptide repeat protein -
  QAD56_RS05640 (QAD56_05630) dprB 1177618..1178022 (-) 405 WP_373930284.1 Holliday junction resolvase RuvX Machinery gene
  QAD56_RS05645 (QAD56_05635) dprA 1178019..1178819 (-) 801 WP_373930286.1 DNA-processing protein DprA Machinery gene
  QAD56_RS05650 (QAD56_05640) minE 1178831..1179064 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  QAD56_RS05655 (QAD56_05645) minD 1179061..1179867 (-) 807 WP_231245509.1 septum site-determining protein MinD -
  QAD56_RS05660 (QAD56_05650) ilvC 1179892..1180884 (-) 993 WP_373930291.1 ketol-acid reductoisomerase -
  QAD56_RS05670 (QAD56_05660) - 1181133..1181915 (+) 783 WP_373930293.1 NAD+ synthase -
  QAD56_RS05675 (QAD56_05665) - 1181912..1182850 (+) 939 WP_373930294.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15268.76 Da        Isoelectric Point: 9.1283

>NTDB_id=860762 QAD56_RS05640 WP_373930284.1 1177618..1178022(-) (dprB) [Helicobacter pylori strain BS08]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLATKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=860762 QAD56_RS05640 WP_373930284.1 1177618..1178022(-) (dprB) [Helicobacter pylori strain BS08]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGACTCTTTGAGTGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAAGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933