Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | QAD56_RS00280 | Genome accession | NZ_CP130625 |
| Coordinates | 61625..62200 (+) | Length | 191 a.a. |
| NCBI ID | WP_286491246.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS08 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56625..67200
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAD56_RS00255 (QAD56_00260) | uvrD | 57316..59361 (+) | 2046 | WP_373930859.1 | DNA helicase UvrD | - |
| QAD56_RS00260 (QAD56_00265) | flgA | 59358..60014 (+) | 657 | WP_373930861.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| QAD56_RS00265 (QAD56_00270) | - | 60024..60587 (+) | 564 | WP_373930863.1 | UbiX family flavin prenyltransferase | - |
| QAD56_RS00270 (QAD56_00275) | coaD | 60587..61060 (+) | 474 | WP_373930865.1 | pantetheine-phosphate adenylyltransferase | - |
| QAD56_RS00275 (QAD56_00280) | tmk | 61062..61637 (+) | 576 | WP_286491248.1 | dTMP kinase | - |
| QAD56_RS00280 (QAD56_00285) | comFC | 61625..62200 (+) | 576 | WP_286491246.1 | ComF family protein | Machinery gene |
| QAD56_RS00285 (QAD56_00290) | - | 62233..64272 (+) | 2040 | WP_373930868.1 | class I SAM-dependent DNA methyltransferase | - |
| QAD56_RS00290 (QAD56_00295) | - | 64269..64913 (+) | 645 | WP_373930870.1 | restriction endonuclease subunit S | - |
| QAD56_RS00295 (QAD56_00300) | - | 64957..65498 (+) | 542 | Protein_57 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21390.00 Da Isoelectric Point: 9.4519
>NTDB_id=860753 QAD56_RS00280 WP_286491246.1 61625..62200(+) (comFC) [Helicobacter pylori strain BS08]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRNFTFKGDKNLDYFLLDDII
TTGTTIKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRNFTFKGDKNLDYFLLDDII
TTGTTIKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=860753 QAD56_RS00280 WP_286491246.1 61625..62200(+) (comFC) [Helicobacter pylori strain BS08]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAGAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCATAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATCAAAGCCCACTTTGCGATTGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAGAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCATAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATCAAAGCCCACTTTGCGATTGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |