Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAP04_RS05510 Genome accession   NZ_CP130623
Coordinates   1158833..1159237 (-) Length   134 a.a.
NCBI ID   WP_237016739.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153833..1164237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP04_RS05485 (QAP04_05470) recJ 1155017..1156567 (+) 1551 WP_373961058.1 single-stranded-DNA-specific exonuclease RecJ -
  QAP04_RS05490 (QAP04_05475) - 1156567..1157448 (+) 882 WP_373961059.1 RluA family pseudouridine synthase -
  QAP04_RS05495 (QAP04_05480) - 1157544..1158104 (-) 561 WP_373961060.1 hypothetical protein -
  QAP04_RS05500 (QAP04_05485) - 1158088..1158426 (-) 339 WP_120918640.1 hypothetical protein -
  QAP04_RS05505 (QAP04_05490) - 1158549..1158701 (-) 153 WP_373961061.1 hypothetical protein -
  QAP04_RS05510 (QAP04_05495) dprB 1158833..1159237 (-) 405 WP_237016739.1 Holliday junction resolvase RuvX Machinery gene
  QAP04_RS05515 (QAP04_05500) dprA 1159234..1160034 (-) 801 WP_140512197.1 DNA-processing protein DprA Machinery gene
  QAP04_RS05520 (QAP04_05505) minE 1160041..1160274 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  QAP04_RS05525 (QAP04_05510) minD 1160271..1161077 (-) 807 WP_373961062.1 septum site-determining protein MinD -
  QAP04_RS05530 (QAP04_05515) ilvC 1161101..1162093 (-) 993 WP_373961063.1 ketol-acid reductoisomerase -
  QAP04_RS05540 (QAP04_05525) - 1162342..1163124 (+) 783 WP_373961064.1 NAD+ synthase -
  QAP04_RS05545 (QAP04_05530) - 1163121..1164059 (+) 939 WP_373961065.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15278.79 Da        Isoelectric Point: 9.8540

>NTDB_id=860740 QAP04_RS05510 WP_237016739.1 1158833..1159237(-) (dprB) [Helicobacter pylori strain BS04]
MILACDVGLKRIGIAALLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNKSYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNRRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=860740 QAP04_RS05510 WP_237016739.1 1158833..1159237(-) (dprB) [Helicobacter pylori strain BS04]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTGCGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATAAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAGGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAACGCTATTGCCAGCAGGTTTTAAAAAACC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948