Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | QAP04_RS00275 | Genome accession | NZ_CP130623 |
| Coordinates | 62375..62950 (+) | Length | 191 a.a. |
| NCBI ID | WP_373961363.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS04 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57375..67950
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAP04_RS00250 (QAP04_00250) | uvrD | 57947..59992 (+) | 2046 | WP_373961359.1 | DNA helicase UvrD | - |
| QAP04_RS00255 (QAP04_00255) | flgA | 59989..60645 (+) | 657 | WP_373961360.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| QAP04_RS00260 (QAP04_00260) | - | 60655..61218 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| QAP04_RS00265 (QAP04_00270) | coaD | 61337..61810 (+) | 474 | WP_373961361.1 | pantetheine-phosphate adenylyltransferase | - |
| QAP04_RS00270 (QAP04_00275) | tmk | 61812..62387 (+) | 576 | WP_373961362.1 | dTMP kinase | - |
| QAP04_RS00275 (QAP04_00280) | comFC | 62375..62950 (+) | 576 | WP_373961363.1 | ComF family protein | Machinery gene |
| QAP04_RS00280 (QAP04_00285) | - | 62983..65019 (+) | 2037 | WP_373961364.1 | N-6 DNA methylase | - |
| QAP04_RS00285 (QAP04_00290) | - | 65016..66227 (+) | 1212 | WP_373961365.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21409.98 Da Isoelectric Point: 8.8864
>NTDB_id=860732 QAP04_RS00275 WP_373961363.1 62375..62950(+) (comFC) [Helicobacter pylori strain BS04]
MRCLTCLKLSFKPLCQNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIVLCSADE
MRCLTCLKLSFKPLCQNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIVLCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=860732 QAP04_RS00275 WP_373961363.1 62375..62950(+) (comFC) [Helicobacter pylori strain BS04]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCACTTTGTCAGAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCTCTAAAATACCTTAAAACTCTAAACATCAAAGCGCACTTTGCAATCGTGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCACTTTGTCAGAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCTCTAAAATACCTTAAAACTCTAAACATCAAAGCGCACTTTGCAATCGTGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |