Detailed information NTG0860374

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q3Y74_RS20340
• Genome accession: NZ_CP130561
• Coordinates: 4141046..4141846 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain KP1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4136046..4146846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3Y74_RS20305 (Q3Y74_20305)	gspH	4136202..4136711 (+)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-
Q3Y74_RS20310 (Q3Y74_20310)	gspI	4136714..4137079 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
Q3Y74_RS20315 (Q3Y74_20315)	gspJ	4137076..4137672 (+)	597	WP_032428541.1	type II secretion system minor pseudopilin GspJ	-
Q3Y74_RS20320 (Q3Y74_20320)	gspK	4137669..4138655 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
Q3Y74_RS20325 (Q3Y74_20325)	gspL	4138642..4139835 (+)	1194	WP_080792608.1	type II secretion system protein GspL	-
Q3Y74_RS20330 (Q3Y74_20330)	-	4139828..4140313 (+)	486	WP_058229142.1	type II secretion system protein M	-
Q3Y74_RS20335 (Q3Y74_20335)	-	4140303..4141049 (+)	747	WP_031588870.1	type II secretion system protein N	-
Q3Y74_RS20340 (Q3Y74_20340)	pilD	4141046..4141846 (+)	801	WP_004213441.1	A24 family peptidase	Machinery gene
Q3Y74_RS20345 (Q3Y74_20345)	hrpB	4141894..4144323 (-)	2430	WP_080792605.1	ATP-dependent helicase HrpB	-
Q3Y74_RS20350 (Q3Y74_20350)	thpR	4144396..4144932 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
Q3Y74_RS20355 (Q3Y74_20355)	sfsA	4144932..4145648 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
Q3Y74_RS20360 (Q3Y74_20360)	dksA	4145811..4146266 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=860374 Q3Y74_RS20340 WP_004213441.1 4141046..4141846(+) (pilD) [Klebsiella pneumoniae strain KP1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=860374 Q3Y74_RS20340 WP_004213441.1 4141046..4141846(+) (pilD) [Klebsiella pneumoniae strain KP1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGTATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCAGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425