Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QRX23_RS02980 | Genome accession | NZ_CP130559 |
| Coordinates | 605902..606447 (+) | Length | 181 a.a. |
| NCBI ID | WP_150222040.1 | Uniprot ID | - |
| Organism | Weissella paramesenteroides strain MbWp-142 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 599310..620003 | 605902..606447 | within | 0 |
Gene organization within MGE regions
Location: 599310..620003
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRX23_RS02915 (QRX23_02915) | - | 599310..600380 (-) | 1071 | WP_330155885.1 | site-specific integrase | - |
| QRX23_RS02920 (QRX23_02920) | - | 600542..601195 (-) | 654 | WP_150222050.1 | Ltp family lipoprotein | - |
| QRX23_RS02925 (QRX23_02925) | - | 601246..601653 (-) | 408 | WP_150222049.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QRX23_RS02930 (QRX23_02930) | - | 601646..602002 (-) | 357 | WP_150222048.1 | helix-turn-helix domain-containing protein | - |
| QRX23_RS02935 (QRX23_02935) | - | 602162..602356 (+) | 195 | WP_150222047.1 | helix-turn-helix transcriptional regulator | - |
| QRX23_RS02940 (QRX23_02940) | - | 602392..603135 (+) | 744 | WP_150222046.1 | phage antirepressor KilAC domain-containing protein | - |
| QRX23_RS02945 (QRX23_02945) | - | 603137..603292 (+) | 156 | WP_166434746.1 | hypothetical protein | - |
| QRX23_RS02950 (QRX23_02950) | - | 603273..603407 (+) | 135 | WP_275138274.1 | hypothetical protein | - |
| QRX23_RS02955 (QRX23_02955) | - | 603636..603860 (+) | 225 | WP_330155886.1 | hypothetical protein | - |
| QRX23_RS02960 (QRX23_02960) | - | 603971..604342 (+) | 372 | WP_150177403.1 | hypothetical protein | - |
| QRX23_RS02965 (QRX23_02965) | - | 604407..604604 (+) | 198 | WP_150177401.1 | hypothetical protein | - |
| QRX23_RS02970 (QRX23_02970) | - | 604588..605229 (+) | 642 | WP_150177399.1 | ERF family protein | - |
| QRX23_RS02975 (QRX23_02975) | - | 605229..605939 (+) | 711 | WP_330155887.1 | putative HNHc nuclease | - |
| QRX23_RS02980 (QRX23_02980) | ssb | 605902..606447 (+) | 546 | WP_150222040.1 | single-stranded DNA-binding protein | Machinery gene |
| QRX23_RS02985 (QRX23_02985) | - | 606456..607322 (+) | 867 | WP_330155888.1 | phage replisome organizer N-terminal domain-containing protein | - |
| QRX23_RS02990 (QRX23_02990) | - | 607309..608034 (+) | 726 | WP_330156120.1 | ATP-binding protein | - |
| QRX23_RS02995 (QRX23_02995) | - | 608037..608195 (+) | 159 | WP_166434745.1 | hypothetical protein | - |
| QRX23_RS03000 (QRX23_03000) | - | 608195..608632 (+) | 438 | WP_330155889.1 | dTDP-glucose pyrophosphorylase | - |
| QRX23_RS03005 (QRX23_03005) | - | 608676..608957 (+) | 282 | WP_150222036.1 | hypothetical protein | - |
| QRX23_RS03010 (QRX23_03010) | - | 609091..609237 (+) | 147 | WP_166434744.1 | hypothetical protein | - |
| QRX23_RS03015 (QRX23_03015) | amaP | 609350..610021 (+) | 672 | WP_330155890.1 | alkaline shock response membrane anchor protein AmaP | - |
| QRX23_RS03020 (QRX23_03020) | - | 610033..610221 (+) | 189 | WP_330155891.1 | DUF2273 domain-containing protein | - |
| QRX23_RS03025 (QRX23_03025) | - | 610246..610728 (+) | 483 | WP_150222033.1 | Asp23/Gls24 family envelope stress response protein | - |
| QRX23_RS03030 (QRX23_03030) | - | 611002..611145 (+) | 144 | WP_166434743.1 | hypothetical protein | - |
| QRX23_RS03035 (QRX23_03035) | - | 611333..611845 (+) | 513 | WP_150222032.1 | GNAT family N-acetyltransferase | - |
| QRX23_RS03040 (QRX23_03040) | - | 611904..612224 (+) | 321 | WP_150222031.1 | multidrug efflux SMR transporter | - |
| QRX23_RS03045 (QRX23_03045) | - | 612346..612786 (+) | 441 | WP_150222030.1 | DUF722 domain-containing protein | - |
| QRX23_RS03050 (QRX23_03050) | - | 613126..613371 (+) | 246 | WP_002828450.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| QRX23_RS03055 (QRX23_03055) | - | 613470..613676 (+) | 207 | WP_002828449.1 | CsbD family protein | - |
| QRX23_RS03060 (QRX23_03060) | - | 613880..614134 (+) | 255 | WP_150222028.1 | hypothetical protein | - |
| QRX23_RS03065 (QRX23_03065) | - | 614218..614346 (+) | 129 | WP_275126623.1 | hypothetical protein | - |
| QRX23_RS03070 (QRX23_03070) | - | 614353..615204 (+) | 852 | WP_330155892.1 | terminase small subunit | - |
| QRX23_RS03075 (QRX23_03075) | - | 615197..616477 (+) | 1281 | WP_150222026.1 | PBSX family phage terminase large subunit | - |
| QRX23_RS03080 (QRX23_03080) | - | 616479..618056 (+) | 1578 | WP_330155893.1 | phage portal protein | - |
| QRX23_RS03085 (QRX23_03085) | - | 618040..618612 (+) | 573 | WP_330155894.1 | hypothetical protein | - |
| QRX23_RS03090 (QRX23_03090) | - | 618605..618809 (+) | 205 | Protein_573 | phage holin | - |
| QRX23_RS03095 (QRX23_03095) | - | 618900..620003 (+) | 1104 | WP_150222007.1 | GH25 family lysozyme | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20210.12 Da Isoelectric Point: 8.3958
>NTDB_id=860342 QRX23_RS02980 WP_150222040.1 605902..606447(+) (ssb) [Weissella paramesenteroides strain MbWp-142]
MINSTVLTGRLTKDMELKYTTSGTAVASATLAVERSFTDGNGERGSDFINFVIWRKSAENMANMTAKGSLVGIEGRLKTR
SYENQQGQKVFVTEVVVNNFSLLESKEVTDQRKQGGVSQPQQNNFNQQQASQGNFNQGNNFNQGNYQNKPQNQSQPRQQQ
TGFTSGQMYGNDQNFEDQLPF
MINSTVLTGRLTKDMELKYTTSGTAVASATLAVERSFTDGNGERGSDFINFVIWRKSAENMANMTAKGSLVGIEGRLKTR
SYENQQGQKVFVTEVVVNNFSLLESKEVTDQRKQGGVSQPQQNNFNQQQASQGNFNQGNNFNQGNYQNKPQNQSQPRQQQ
TGFTSGQMYGNDQNFEDQLPF
Nucleotide
Download Length: 546 bp
>NTDB_id=860342 QRX23_RS02980 WP_150222040.1 605902..606447(+) (ssb) [Weissella paramesenteroides strain MbWp-142]
ATGATAAACAGCACCGTACTAACTGGCAGACTAACTAAAGACATGGAGTTGAAATACACCACGTCAGGTACAGCCGTAGC
CAGTGCAACATTAGCAGTCGAACGCTCATTTACTGACGGTAATGGCGAACGAGGTAGTGACTTTATTAACTTTGTTATTT
GGCGTAAGAGCGCTGAAAACATGGCAAATATGACGGCTAAGGGTTCGTTGGTTGGTATTGAGGGACGGCTAAAAACTCGT
AGCTATGAGAACCAACAAGGACAAAAAGTATTTGTTACCGAAGTTGTCGTTAATAATTTCTCGCTATTAGAAAGCAAGGA
AGTTACTGACCAACGTAAGCAGGGCGGGGTTAGTCAACCGCAGCAAAATAATTTTAATCAGCAACAGGCGTCACAGGGCA
ATTTCAATCAGGGTAATAACTTCAATCAAGGTAATTACCAAAACAAGCCGCAAAATCAGTCACAACCAAGACAACAACAG
ACTGGTTTTACCTCTGGTCAAATGTATGGTAACGATCAGAATTTTGAAGACCAATTACCATTCTAG
ATGATAAACAGCACCGTACTAACTGGCAGACTAACTAAAGACATGGAGTTGAAATACACCACGTCAGGTACAGCCGTAGC
CAGTGCAACATTAGCAGTCGAACGCTCATTTACTGACGGTAATGGCGAACGAGGTAGTGACTTTATTAACTTTGTTATTT
GGCGTAAGAGCGCTGAAAACATGGCAAATATGACGGCTAAGGGTTCGTTGGTTGGTATTGAGGGACGGCTAAAAACTCGT
AGCTATGAGAACCAACAAGGACAAAAAGTATTTGTTACCGAAGTTGTCGTTAATAATTTCTCGCTATTAGAAAGCAAGGA
AGTTACTGACCAACGTAAGCAGGGCGGGGTTAGTCAACCGCAGCAAAATAATTTTAATCAGCAACAGGCGTCACAGGGCA
ATTTCAATCAGGGTAATAACTTCAATCAAGGTAATTACCAAAACAAGCCGCAAAATCAGTCACAACCAAGACAACAACAG
ACTGGTTTTACCTCTGGTCAAATGTATGGTAACGATCAGAATTTTGAAGACCAATTACCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.801 |
94.475 |
0.508 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.264 |
58.564 |
0.365 |