Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QRX23_RS02055 | Genome accession | NZ_CP130559 |
| Coordinates | 450092..450619 (+) | Length | 175 a.a. |
| NCBI ID | WP_131473413.1 | Uniprot ID | - |
| Organism | Weissella paramesenteroides strain MbWp-142 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 442810..483210 | 450092..450619 | within | 0 |
Gene organization within MGE regions
Location: 442810..483210
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRX23_RS01985 (QRX23_01985) | - | 442810..443895 (-) | 1086 | WP_330155759.1 | site-specific integrase | - |
| QRX23_RS01990 (QRX23_01990) | - | 444052..444951 (-) | 900 | WP_330155760.1 | hypothetical protein | - |
| QRX23_RS01995 (QRX23_01995) | - | 444984..445394 (-) | 411 | WP_330155761.1 | hypothetical protein | - |
| QRX23_RS02000 (QRX23_02000) | - | 445398..445748 (-) | 351 | WP_330155762.1 | helix-turn-helix transcriptional regulator | - |
| QRX23_RS02005 (QRX23_02005) | - | 446007..446237 (+) | 231 | WP_330155763.1 | XRE family transcriptional regulator | - |
| QRX23_RS02010 (QRX23_02010) | - | 446250..447020 (+) | 771 | WP_330155764.1 | phage antirepressor KilAC domain-containing protein | - |
| QRX23_RS02015 (QRX23_02015) | - | 447023..447424 (+) | 402 | WP_330155765.1 | hypothetical protein | - |
| QRX23_RS02020 (QRX23_02020) | - | 447428..447637 (+) | 210 | WP_330155766.1 | hypothetical protein | - |
| QRX23_RS02025 (QRX23_02025) | - | 447641..447853 (+) | 213 | WP_330155767.1 | hypothetical protein | - |
| QRX23_RS02030 (QRX23_02030) | - | 447918..448322 (+) | 405 | WP_330155768.1 | hypothetical protein | - |
| QRX23_RS02035 (QRX23_02035) | - | 448326..448532 (+) | 207 | WP_330155769.1 | helix-turn-helix transcriptional regulator | - |
| QRX23_RS02040 (QRX23_02040) | - | 448600..448794 (+) | 195 | WP_277375515.1 | hypothetical protein | - |
| QRX23_RS02045 (QRX23_02045) | - | 448778..449419 (+) | 642 | WP_150191260.1 | ERF family protein | - |
| QRX23_RS02050 (QRX23_02050) | - | 449419..450129 (+) | 711 | WP_330155770.1 | putative HNHc nuclease | - |
| QRX23_RS02055 (QRX23_02055) | ssb | 450092..450619 (+) | 528 | WP_131473413.1 | single-stranded DNA-binding protein | Machinery gene |
| QRX23_RS02060 (QRX23_02060) | - | 450630..451508 (+) | 879 | WP_330155771.1 | phage replisome organizer N-terminal domain-containing protein | - |
| QRX23_RS02065 (QRX23_02065) | - | 451495..452220 (+) | 726 | WP_164223985.1 | ATP-binding protein | - |
| QRX23_RS02070 (QRX23_02070) | - | 452220..452381 (+) | 162 | WP_330155772.1 | hypothetical protein | - |
| QRX23_RS02075 (QRX23_02075) | - | 452381..452818 (+) | 438 | WP_277380235.1 | dTDP-glucose pyrophosphorylase | - |
| QRX23_RS02080 (QRX23_02080) | - | 452856..453221 (+) | 366 | WP_330155773.1 | DUF1523 family protein | - |
| QRX23_RS02085 (QRX23_02085) | - | 453349..454023 (+) | 675 | WP_330155774.1 | hypothetical protein | - |
| QRX23_RS02090 (QRX23_02090) | - | 454023..454274 (+) | 252 | WP_330155775.1 | DUF3310 domain-containing protein | - |
| QRX23_RS02095 (QRX23_02095) | - | 454249..454401 (+) | 153 | WP_330155776.1 | hypothetical protein | - |
| QRX23_RS02100 (QRX23_02100) | - | 454401..454613 (+) | 213 | WP_330155777.1 | hypothetical protein | - |
| QRX23_RS02105 (QRX23_02105) | - | 454698..455003 (+) | 306 | WP_330155778.1 | hypothetical protein | - |
| QRX23_RS02110 (QRX23_02110) | - | 455202..455759 (+) | 558 | WP_330155779.1 | hypothetical protein | - |
| QRX23_RS02115 (QRX23_02115) | - | 455927..456349 (+) | 423 | WP_330156117.1 | ArpU family transcriptional regulator | - |
| QRX23_RS02120 (QRX23_02120) | - | 456414..457313 (+) | 900 | WP_330155780.1 | ParA family protein | - |
| QRX23_RS02125 (QRX23_02125) | - | 457306..457704 (+) | 399 | WP_330155781.1 | hypothetical protein | - |
| QRX23_RS02130 (QRX23_02130) | - | 457694..458383 (+) | 690 | WP_330155782.1 | hypothetical protein | - |
| QRX23_RS02135 (QRX23_02135) | - | 458709..459326 (+) | 618 | WP_330155783.1 | hypothetical protein | - |
| QRX23_RS02140 (QRX23_02140) | - | 459417..459677 (+) | 261 | WP_330155784.1 | hypothetical protein | - |
| QRX23_RS02145 (QRX23_02145) | - | 459682..459852 (+) | 171 | WP_330155785.1 | hypothetical protein | - |
| QRX23_RS02150 (QRX23_02150) | - | 459956..460444 (+) | 489 | WP_330155786.1 | terminase small subunit | - |
| QRX23_RS02155 (QRX23_02155) | - | 460444..461727 (+) | 1284 | WP_330155787.1 | PBSX family phage terminase large subunit | - |
| QRX23_RS02160 (QRX23_02160) | - | 461736..463307 (+) | 1572 | WP_330155788.1 | phage portal protein | - |
| QRX23_RS02165 (QRX23_02165) | - | 463297..464241 (+) | 945 | WP_330155789.1 | minor capsid protein | - |
| QRX23_RS02170 (QRX23_02170) | - | 464404..464910 (+) | 507 | WP_330155790.1 | DUF4355 domain-containing protein | - |
| QRX23_RS02175 (QRX23_02175) | - | 464929..465795 (+) | 867 | WP_330155791.1 | hypothetical protein | - |
| QRX23_RS02180 (QRX23_02180) | - | 465870..466295 (+) | 426 | WP_330155792.1 | Ig-like domain-containing protein | - |
| QRX23_RS02185 (QRX23_02185) | - | 466348..466683 (+) | 336 | WP_330155793.1 | phage head-tail connector protein | - |
| QRX23_RS02190 (QRX23_02190) | - | 466683..466964 (+) | 282 | WP_330155794.1 | hypothetical protein | - |
| QRX23_RS02195 (QRX23_02195) | - | 466967..467326 (+) | 360 | WP_330155795.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| QRX23_RS02200 (QRX23_02200) | - | 467332..467682 (+) | 351 | WP_330155796.1 | hypothetical protein | - |
| QRX23_RS02205 (QRX23_02205) | - | 467695..468273 (+) | 579 | WP_330155797.1 | phage major tail protein, TP901-1 family | - |
| QRX23_RS02210 (QRX23_02210) | - | 468368..468820 (+) | 453 | WP_330155798.1 | tail assembly chaperone | - |
| QRX23_RS02215 (QRX23_02215) | - | 468895..469140 (+) | 246 | WP_330155799.1 | hypothetical protein | - |
| QRX23_RS02220 (QRX23_02220) | - | 469143..473084 (+) | 3942 | WP_330155800.1 | phage tail tape measure protein | - |
| QRX23_RS02225 (QRX23_02225) | - | 473084..473905 (+) | 822 | WP_330155801.1 | phage tail domain-containing protein | - |
| QRX23_RS02230 (QRX23_02230) | - | 473902..478170 (+) | 4269 | WP_330155802.1 | phage tail protein | - |
| QRX23_RS02235 (QRX23_02235) | - | 478184..478594 (+) | 411 | WP_330155803.1 | hypothetical protein | - |
| QRX23_RS02240 (QRX23_02240) | - | 478597..478866 (+) | 270 | WP_330155804.1 | hypothetical protein | - |
| QRX23_RS02245 (QRX23_02245) | - | 478879..479112 (+) | 234 | WP_277375484.1 | hypothetical protein | - |
| QRX23_RS02250 (QRX23_02250) | - | 479129..479330 (+) | 202 | Protein_415 | phage holin | - |
| QRX23_RS02255 (QRX23_02255) | - | 479424..480527 (+) | 1104 | WP_330155805.1 | GH25 family lysozyme | - |
| QRX23_RS02265 (QRX23_02265) | - | 482224..483210 (+) | 987 | WP_330155806.1 | GMP reductase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19560.45 Da Isoelectric Point: 9.5083
>NTDB_id=860341 QRX23_RS02055 WP_131473413.1 450092..450619(+) (ssb) [Weissella paramesenteroides strain MbWp-142]
MINNVTLTGRLTKDMELKYTTSGTAVASATVAVERSFTDGNGERGSDFINFVIWRKAAENMAKMTAKGSLIGLEGRLQTR
SYDNQQGQKVFVTEVVVNNFSLLESKEVTDQRKQGGVSQPQQNNFNQQPQRQNNFNQQQAPQGNFNQQRQQPQQNNFGGS
QGYGNGNNFEDQLPF
MINNVTLTGRLTKDMELKYTTSGTAVASATVAVERSFTDGNGERGSDFINFVIWRKAAENMAKMTAKGSLIGLEGRLQTR
SYDNQQGQKVFVTEVVVNNFSLLESKEVTDQRKQGGVSQPQQNNFNQQPQRQNNFNQQQAPQGNFNQQRQQPQQNNFGGS
QGYGNGNNFEDQLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=860341 QRX23_RS02055 WP_131473413.1 450092..450619(+) (ssb) [Weissella paramesenteroides strain MbWp-142]
ATGATAAACAACGTCACACTAACTGGCAGACTAACTAAAGATATGGAGTTGAAATATACCACGTCAGGTACAGCCGTAGC
CAGTGCAACAGTAGCAGTTGAACGTTCATTTACTGACGGTAATGGTGAACGAGGTAGTGACTTTATTAACTTTGTTATTT
GGCGTAAGGCGGCTGAAAATATGGCAAAAATGACCGCTAAAGGTTCATTGATTGGACTGGAAGGACGTTTGCAAACACGT
AGCTATGATAACCAGCAAGGGCAAAAAGTATTCGTTACCGAAGTAGTTGTTAATAATTTCTCGTTATTAGAAAGCAAGGA
AGTGACTGACCAACGTAAGCAAGGTGGGGTTAGTCAACCACAGCAAAATAACTTTAATCAACAGCCACAGCGACAAAACA
ATTTCAACCAACAGCAAGCACCACAAGGAAACTTCAATCAACAACGCCAACAACCACAACAAAATAATTTTGGTGGATCA
CAGGGATATGGCAACGGCAATAACTTTGAAGACCAATTGCCGTTCTAG
ATGATAAACAACGTCACACTAACTGGCAGACTAACTAAAGATATGGAGTTGAAATATACCACGTCAGGTACAGCCGTAGC
CAGTGCAACAGTAGCAGTTGAACGTTCATTTACTGACGGTAATGGTGAACGAGGTAGTGACTTTATTAACTTTGTTATTT
GGCGTAAGGCGGCTGAAAATATGGCAAAAATGACCGCTAAAGGTTCATTGATTGGACTGGAAGGACGTTTGCAAACACGT
AGCTATGATAACCAGCAAGGGCAAAAAGTATTCGTTACCGAAGTAGTTGTTAATAATTTCTCGTTATTAGAAAGCAAGGA
AGTGACTGACCAACGTAAGCAAGGTGGGGTTAGTCAACCACAGCAAAATAACTTTAATCAACAGCCACAGCGACAAAACA
ATTTCAACCAACAGCAAGCACCACAAGGAAACTTCAATCAACAACGCCAACAACCACAACAAAATAATTTTGGTGGATCA
CAGGGATATGGCAACGGCAATAACTTTGAAGACCAATTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.486 |
100 |
0.543 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
60.571 |
0.366 |