Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QRX23_RS01250 Genome accession   NZ_CP130559
Coordinates   270952..271503 (+) Length   183 a.a.
NCBI ID   WP_002828738.1    Uniprot ID   C5RAY6
Organism   Weissella paramesenteroides strain MbWp-142     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 265952..276503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX23_RS01225 (QRX23_01225) purR 266082..266930 (+) 849 WP_002828743.1 pur operon repressor -
  QRX23_RS01230 (QRX23_01230) glmU 266952..268334 (+) 1383 WP_330155656.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  QRX23_RS01235 (QRX23_01235) - 268459..269445 (+) 987 WP_040760995.1 ribose-phosphate diphosphokinase -
  QRX23_RS01240 (QRX23_01240) - 269511..270455 (+) 945 WP_330155657.1 nucleoside hydrolase -
  QRX23_RS01245 (QRX23_01245) rpsF 270582..270881 (+) 300 WP_002828739.1 30S ribosomal protein S6 -
  QRX23_RS01250 (QRX23_01250) ssb 270952..271503 (+) 552 WP_002828738.1 single-stranded DNA-binding protein Machinery gene
  QRX23_RS01255 (QRX23_01255) rpsR 271560..271802 (+) 243 WP_002828737.1 30S ribosomal protein S18 -
  QRX23_RS01260 (QRX23_01260) - 272097..272564 (+) 468 WP_330155658.1 hypothetical protein -
  QRX23_RS01265 (QRX23_01265) purE 272830..273321 (+) 492 WP_330155659.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QRX23_RS01270 (QRX23_01270) purK 273314..274435 (+) 1122 WP_330155660.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QRX23_RS01275 (QRX23_01275) purC 274438..275175 (+) 738 WP_330155661.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  QRX23_RS01280 (QRX23_01280) purS 275177..275440 (+) 264 WP_140837207.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  QRX23_RS01285 (QRX23_01285) purQ 275437..276123 (+) 687 WP_330155662.1 phosphoribosylformylglycinamidine synthase subunit PurQ -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19776.29 Da        Isoelectric Point: 4.7513

>NTDB_id=860335 QRX23_RS01250 WP_002828738.1 270952..271503(+) (ssb) [Weissella paramesenteroides strain MbWp-142]
MINRVVLVGRLTRDVELRYTTSGAAVGSFTIAVNRQFTNANGERDTDFINAVIWRKSAENFANFTSKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEARRSQSGSNNTNNFGGGQQRSQGNFNSSSSQNPFGAPASSGNVFNGGSAN
SQSSNDPFGGGQEIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=860335 QRX23_RS01250 WP_002828738.1 270952..271503(+) (ssb) [Weissella paramesenteroides strain MbWp-142]
ATGATAAATCGTGTTGTTCTGGTTGGTCGTTTGACACGTGATGTTGAATTACGTTATACGACTTCTGGTGCTGCTGTTGG
TTCATTTACAATTGCCGTTAATCGACAATTTACAAATGCTAACGGTGAGCGTGATACTGATTTTATTAATGCTGTCATTT
GGCGTAAGTCAGCAGAAAATTTTGCTAATTTTACATCAAAAGGTTCGTTAGTTGGTATTGAAGGCCGTATTCAAACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTTTATGTCACGGAAGTCGTCGTTGATAACTTCTCATTGTTAGAAAGTCGTGC
TGAAAGTGAAGCACGCCGTTCTCAGAGTGGTTCAAATAATACGAATAATTTTGGTGGTGGACAGCAACGCAGTCAAGGAA
ACTTTAATTCCTCATCATCACAAAACCCATTTGGTGCACCAGCATCTAGTGGTAATGTGTTCAATGGTGGTTCAGCTAAT
TCACAATCATCAAATGATCCTTTCGGTGGTGGTCAAGAGATTGATATCTCTGATGATGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5RAY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.761

100

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.63

100

0.519