Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V84_RS08005 Genome accession   NZ_CP130551
Coordinates   1661079..1661765 (-) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA01-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1656079..1666765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V84_RS07985 rpsT 1656993..1657244 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V84_RS07990 holA 1657289..1658263 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  Q3V84_RS07995 comEC 1658320..1660521 (-) 2202 WP_000967504.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V84_RS08000 - 1660526..1660987 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V84_RS08005 comEA 1661079..1661765 (-) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  Q3V84_RS08010 - 1661805..1662521 (-) 717 WP_000942456.1 class I SAM-dependent methyltransferase -
  Q3V84_RS08015 rsfS 1662524..1662877 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V84_RS08020 yqeK 1662878..1663462 (-) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V84_RS08025 nadD 1663452..1664021 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V84_RS08030 yhbY 1664024..1664314 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  Q3V84_RS08035 aroE 1664318..1665124 (-) 807 WP_000666767.1 shikimate dehydrogenase -
  Q3V84_RS08040 yqeH 1665138..1666238 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=860317 Q3V84_RS08005 WP_078055782.1 1661079..1661765(-) (comEA) [Staphylococcus aureus strain SA01-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=860317 Q3V84_RS08005 WP_078055782.1 1661079..1661765(-) (comEA) [Staphylococcus aureus strain SA01-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982