Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V84_RS02560 Genome accession   NZ_CP130551
Coordinates   551416..551985 (+) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain SA01-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 546416..556985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V84_RS02535 cysE 547629..548276 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V84_RS02540 cysS 548260..549660 (+) 1401 WP_000631977.1 cysteine--tRNA ligase -
  Q3V84_RS02545 - 549653..550057 (+) 405 WP_000370186.1 Mini-ribonuclease 3 -
  Q3V84_RS02550 rlmB 550065..550811 (+) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V84_RS02555 - 550811..551335 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q3V84_RS02560 sigH 551416..551985 (+) 570 WP_000872872.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V84_RS02565 rpmG 552100..552243 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V84_RS02570 secE 552299..552481 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V84_RS02575 nusG 552494..553042 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V84_RS02580 rplK 553223..553645 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V84_RS02585 rplA 553853..554545 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V84_RS02590 rplJ 554817..555317 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q3V84_RS02595 rplL 555360..555728 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V84_RS02600 - 555903..556511 (+) 609 WP_000020296.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=860296 Q3V84_RS02560 WP_000872872.1 551416..551985(+) (sigH) [Staphylococcus aureus strain SA01-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=860296 Q3V84_RS02560 WP_000872872.1 551416..551985(+) (sigH) [Staphylococcus aureus strain SA01-SX]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979