Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V70_RS11855 Genome accession   NZ_CP130549
Coordinates   2302668..2303063 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA03-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2297668..2308063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V70_RS11830 thiE 2298268..2298909 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  Q3V70_RS11835 thiM 2298911..2299702 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  Q3V70_RS11840 thiD 2299686..2300516 (-) 831 WP_303262995.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V70_RS11845 tenA 2300509..2301198 (-) 690 WP_000396077.1 thiaminase II -
  Q3V70_RS11850 sceD 2301584..2302279 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  Q3V70_RS11855 ssb 2302668..2303063 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V70_RS11860 - 2303257..2303697 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V70_RS11865 fabZ 2303756..2304196 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V70_RS11870 murA 2304230..2305495 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V70_RS11875 - 2305606..2305839 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V70_RS11880 - 2305971..2306063 (-) 93 WP_001790611.1 hypothetical protein -
  Q3V70_RS11885 - 2306401..2306805 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=860242 Q3V70_RS11855 WP_000932694.1 2302668..2303063(-) (ssb) [Staphylococcus aureus strain SA03-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=860242 Q3V70_RS11855 WP_000932694.1 2302668..2303063(-) (ssb) [Staphylococcus aureus strain SA03-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992