Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V70_RS02755 Genome accession   NZ_CP130549
Coordinates   580494..581063 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA03-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 575494..586063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V70_RS02730 cysE 576707..577354 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V70_RS02735 cysS 577338..578738 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  Q3V70_RS02740 - 578731..579135 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q3V70_RS02745 rlmB 579143..579889 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V70_RS02750 - 579889..580413 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q3V70_RS02755 sigH 580494..581063 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V70_RS02760 rpmG 581178..581321 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V70_RS02765 secE 581377..581559 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  Q3V70_RS02770 nusG 581572..582120 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V70_RS02775 rplK 582301..582723 (+) 423 WP_001085794.1 50S ribosomal protein L11 -
  Q3V70_RS02780 rplA 582931..583623 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V70_RS02785 rplJ 583895..584395 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q3V70_RS02790 rplL 584438..584806 (+) 369 WP_001273585.1 50S ribosomal protein L7/L12 -
  Q3V70_RS02795 - 584981..585589 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=860207 Q3V70_RS02755 WP_000872873.1 580494..581063(+) (sigH) [Staphylococcus aureus strain SA03-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=860207 Q3V70_RS02755 WP_000872873.1 580494..581063(+) (sigH) [Staphylococcus aureus strain SA03-SX]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984