Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3V86_RS11200 Genome accession   NZ_CP130547
Coordinates   2199870..2200265 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA04-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2194870..2205265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V86_RS11175 thiE 2195469..2196110 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  Q3V86_RS11180 thiM 2196112..2196903 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  Q3V86_RS11185 thiD 2196887..2197717 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q3V86_RS11190 tenA 2197710..2198399 (-) 690 WP_000396068.1 thiaminase II -
  Q3V86_RS11195 sceD 2198786..2199481 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  Q3V86_RS11200 ssb 2199870..2200265 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  Q3V86_RS11205 - 2200459..2200899 (+) 441 WP_000846746.1 YwpF-like family protein -
  Q3V86_RS11210 fabZ 2200956..2201396 (-) 441 WP_248313938.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q3V86_RS11215 murA 2201430..2202695 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q3V86_RS11220 - 2202806..2203039 (-) 234 WP_000384523.1 DUF1146 family protein -
  Q3V86_RS11225 - 2203692..2204096 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=860197 Q3V86_RS11200 WP_000932694.1 2199870..2200265(-) (ssb) [Staphylococcus aureus strain SA04-SX]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=860197 Q3V86_RS11200 WP_000932694.1 2199870..2200265(-) (ssb) [Staphylococcus aureus strain SA04-SX]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992